RNA id: AMCG00012939


Basic Information

Item Value
RNA id AMCG00012939
length 5795
RNA type mRNA
GC content 0.48
exon number 20
gene id AMCG00012939
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14479076 ~ 14510489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGTGTCTTATACggtgaaggaagaaaaaaaaaacactaaatccgTTTGGATTATTGGGATACTTCTCTGTCGTTGTCACGGATCTGTGCGCTTTGGGAAGAAAGGAAGACGCGATGGTATTCGTGCAGCTGGAAATGAACGTATTCATGGATTAAAGAAGCTGTTTGGGGAATCATGAGCACAGGTATCAAGAAACCACCAGTGGCGCCCAAACCTAAGCTAGTTCAGACCCAGAAGCCCTCTCCCCCTCCTGTTGCACCCAAACCGGATATTCTTTCCCAATCAGCTCCTGCACCAAAAAAAGCCAAGCCAGCAGTCGCACCTAAACCATGCTTTCCCAAAAGTGTGTTGCTCCACAACTCGAGTCCCCCCAGCTTGAAGAACACATCCCAAACCTTAACCGATGAGAAGGCCGAGCTTTCCGAAAACCTCGGGCTGCTTAATTCTAAGAACGGCCTACAGACGGAGTTCTGTAAGCTCAACTCAAATTACATCATCCCAACATGCACTTGTATCCCAGAGTGTGGTCACACCTGCCAACACACTGGGAACTCCAAAAAAACTGAGATTGTCATTGATCAGCTGGAAAAACTGGAAACCTGGCAGAATGGCAGAGCAGACAGGACAGAGTTTTCTCCTGTTCCCAGAACTAACAATTATCACAAGCACAAACATCAGGAAAGCTCCACTGCCCGGAAGGACAAGGCAGATAcctttgatccggatcagaaactGCATTCAACTGGAAGTATTGATACATTTGCCGGGAAATGCTTACTTCCTGAAGGACCACAGGCAATGGCTTACAAGCAAGTGAAAGACCTTCAAGCTAACAGTCAAATAACACTGTCTAGTGTATGTCAGCCTCGAAACATCTCTGCACACTCTGAAAACCCTGTCTGCTCCACAGAGAGTGGATGTGAGCCCAGAGAGGAGACCAGCAGGGACAGTGAACCTTTAATTTGCCCAGCAGCACCGAAGAAACCTCTTCCGGTCCCCATGCCAAGAAAGTCGAGAAAATGTGGACTTGTGAGGCAGGATTGTATTGAAAGCAACCAACTTGAGGTGAAGGACACCACTGAAAGCACAGACCAGGAGACGGATGGGAAATCTGTGAAGAACAGTCCGTTTAAGTCTCCAAAAGTTTGCATCCATACTCAGAGCGTTTCCTATTCCAGAAACCCTGGGGAAAACCAAGCACATGCCGAACTCTCCCATGGAGGAGATTCAGGTAAAAAATCAGAGAAGCCAGATCAAGTGTGTGGAGATGCCTCTGTGGGTGTACTGGAGAACATGTCCCATCTTGCTGATTGTGGAGAGGTGGAAGAGGAGGATGCGATACAGCCCCCTGCAGTGTCTGAAAGTGAGGATGCAGAGAGGACCAGCAGCTTTGTGCATGCCCCTGCTACCAGGAGCCATCTCCGGTTCAGAGCTTCCTGTAACATGCAGCTCACTGTGGCTAACACTCTTGCATTTTCTGAAGAGAAAAGCCACACTACAGACATCAACTCTCAGACTGAAAGGTCACCAAAAGTGGCCCCAAAGAAGCCACAGAGACACAGCTTACCTGCCTCTGGACTTCTGAAGAAAGAGCTTTCAGAGGAGTTGAATGAGAGGAGCCGCTGTGTGGGAGAGGGGGAGTCTGGTCCCACTAACCAAGACTGTCCACAAGAGGAAGAGCAGATTGTTCCTGTTGAGGAGGACTTGAAGCCGGAACCGCCGACGGAGAAGCCTGCATGGAGGCTACATCGCCCCATTATGCCGTTTTTTGGAAAACCTGATTCTTTAAAAACTGCCAGCACCAGGAATGTGCACGCCAAAGTGCTTAGTCTGGGCAAACCCAGAGCCAAGTCCTTCTCATCGGCAGACCTGGAACGCTCAGAGAGCTTGCCCAAGGAAGGGCAGAAGAGAAGTTCTTTCAGGAAGCTTCTAGAAATGAAACTCTCTGTGAGAAAGCTCCCAAGGTTGCTGGCCAAAAGCAGCCAGTCCCTAGACTGCACCACAGTAGCGGCAGATCCTCCTATGGATGAGTACAGAACTGCCGCCCAATACAGCCCCGTGGCAAAGACACGTGGGCAGGTGGCCAATGGCCAGTGTGAGGCTCCAATCACTGTGAATAGCAAATCGGACTTGGTGGATGGACTGAAGGCCTTGTGTTCGCAGAACCTCCTGGAGGGAAGTTTATATCAGGAGTCCCTCCCATTTCCGGACTTGGATGTGGAATATGAGAATGTGCCTCATTACGAGGAAATCCCGGAGTACATGAACTTGCCTTTCCGGAACGCTTCTGGATTACGCCACTCTGTATCACCACCTTTCAGCTGGAACAATTCCTCGAGCGTGGAAGATGCGGAGGCAGACCTGTACGAGGTTCAGGAACCTTATGAGCCCCACCTGAGgCCCACGCTGGACGGGGACCCCAGGCTGGAGAATGACCACTCGGAGGAAGAGGAAATGGCAAACAGCTCTGATGAAGATGACAACAGCTCGGCCTCCAGCAAAGGAGAGCTGGATGCGTCAGGAGATAGACAGCACGAGCTGGGAGCCAAGAGGACAAAGGTGGTCCACATCGCCAGGGAGATCATGAGCTCTGAGAAAGATTTCCGAGATGCAGTAGCGAAGGCCTCCAGGCAGAGTGGGAAGCCAGTGATTGAGGAACGCACTTTAAACCAGATTCTGTATTACCTGCCTCAACTCTACGAGCTCAACAGAGACCTTCTGCGTGAGCTGGAAGAGAGAGTGGCTCACTGGAACGACCATCAGAGGATAGCGGATATCTTTGTGAAGAAGGGTCCCTACCTCAAGATGTACTCCACCTACATCAAGGAATTCGATAAGAGCATTGCTCTGCTGGATGAGCAGTGCAAGAGGAACCCAGGCTTCGCCGGTGTGGTGAGGGAGTTCGAGATGAGTCCCCGGTGCGCCAACCTGGCCCTCAAACACTACCTGCTCAAGCCGGTGCAGAGAATCCCACAGTACCAGCTGCTGCTCACAGATTATTTGAAGAACCTCCATGAAGATTCCTCAGACTACAAAGATACACAAgcgGCTCTCAGCATCGTCATCGAGGTGGCAAACCATGCGAATGACATCATGAAACAAGGGGATAACTTCCAGAAGCTCATGCAGATCCAGTACAGTCTAAACGGGCATCATGAGATTGTCCAGCCAGGCCGGGTTTTCCTGAAAGAGGGGACTCTGATGAAGCTGTCTCGGAAGGTCATGCAGCCCAGGATGTTCTTCCTGTTTAATGACACCCTGCTGTACACCACCCCTGTGCAGTCCGGAATGCATAAGCTAAACAGCATGCTCTCTCTGGCAGGAATGAAGGTGAGCAAACCGACTCAAGAAGCCTATCAAAACGAACTGAACATCGAAAGTGTGGAGCGGTCATTCATTCTGTCAGCCAGttcTGCCAGAGAGCGAGATGCCTGGCTACAAGCCATTTCCAAAGCTATTGACGACTACACCAGGAAGAAAATCACATTCTTTGCAAGCAAGAGCCTGGAGGAGGCTGACTCGGTGAGCATGGACAGTGGGGCTCCTCTCGGCTCCAAGGCTCCCATCTGGATCCCTGACCTGCGTGCCACTATGTGTATGATCTGCACCTGCGAGTTCACACTCACCTGGAGGAGGCACCACTGCCGGGCCTGTGGCAAGGTTGTGTGTCAGTCCTGCTCTTCAAATAAGCATCGCCTTGACTACCTGAAGAACCAGTCTGCCAGAGTGTGTGACCAGTGCATTGTCAAGCTTCAGCAAAACGCAGATGAAGCAGTCCCTGCAGCCGTGTCTCCCTCGGGCAAGTCCTCCACCGGGGCCTTCTCCTCTGTGCTCATCAGCATTCCCTCGGGCAGGAAGCAGAAGAAGATCCCAGCAGCCCTCAAAGAAgTGTCGGCAAGCACCGAGAACTCCTCCATGAGTGGCTACCTGCACAGGTCCAAGGGCCACAAGAAACCCTGGAAGCGGCTGTGGTTTGTCATCAAGAACAAGGTCCTATACACCTATGCTGCTAGCGAGGACGTGGCGGCCTTGGAGAGCCAGCCCCTGCTTGGCTTCCACCTGAAGGAAGAGCGAGCCGACCAGATGCTGCAGTTCAAGCTCTACCACAAACACACGCTGTTCTACATATTCAAAGCGGACGATGCCCCGACAGCCCAGAAGTGGATGGAAGCTTTTCAAGAAGCCACTGTCCTGTAAGGCTGTGGTCGCATACAGGACTGACGAAACCAGCGCACAGCATTCCTCTGCACGGACACCGGCCTTCATGACCACTGCACAGACACGGAGGCGTTTGTGGTCGTGGTGGCTCGCAAAAAGTCATTTTTAGTGATGTCTCCCCTCTTGTACATATTCAGACATGTGACAACCGTGGGGTTCTGACAGTGGAGGAACATAAAGGCAGGCTGTTCTTTTATAGCTTCCCCAGGTCCTCTATTCAATGTATACCCAGTATTAGCTGTGAGACACTTGGCAGTGAAATCACTTGGTGCCTTTAAGCCTATTTAAGCCTTCTTCCTAGACTACAATGCACTTGCCATTTCCTGGTGCTTTAGGATATAGTGTACATGTACATAATTCAAAGTAAGCAGCACTcatggctgtttttgttttattttagaactCTTTAtctaatttcatattttaaatgtaggcCCAGGTGGCTTATGGTTGTGTAAAAAGACGATCATGAAGTTTGCTGACCGTATGAGTGCTGCTTCAGTGTCAGGTGCTCTGCGGACTAACCCAAGTGGACTTGGTCAGGTGGATAGTATGCAGGTGGATGTGTTGTAATGTCCCACTCTCAGGAAAAGGAAGAATACCTTGCAGACCACTTAATCCAGTAGCCCTCTGTAGTTCTGACTCGTAGGAATGCCATCGCCACTTCCTATGAGAATCGCATCTGCAGGTATACGGATCCTGTCTGTAATACTCTGCAGTGCCAGTGGTATTTATGTTTGACagatgtttaaatgtacatctgttacttatgaaatgtaaatgcaatcaattttatttttctaatgagTTTTTTGAAAGAGATAATCTTTTCTACAAACCATATATTTGACTTAGTTTTGTTTCCACTTCAATATAATGGTATATAaccattatattgtttttaaacccCTTGGAAAATGGCATactatgatttgtttttttgatatTCCTAACTGCAGGGTATTTGAAATTTGACATTGACAAGGATGGGATGTTCCTTGATCTAAGAGAGCTCTAAgcagacttttttattttttttaatgttactaaATTATTCTTAAGTGTGCCGCCTGAAGGGAGAAAGCTGAAGATGTCTGGTCGAATAAGTTTGTGTTCTACATTCATTGGGCTATTCTGAGCAACACCAGCAcctgaatttccttttttttttttttaaacccagccGATGTAATtatctgtaatgtatttatactttgttttttgtttttaaattgtataggACTGTTTACATCTTGTATTTACACTTGCTAATTTGACCATCATGGATTGCACTATGCTGTATAGATGGAAATTTTGGAAAGACAATCCATGCGGGTGGGTTAATTCCGTGTCATTCATGTATCACTACATGCGTTTGTACAGACCAATGTATAAAAACTCTCTGAACAAGTATTTGGTTGAGATCATACTGTCTCCTTTACACTTGCTgtcttaaaacattttgttatagttttgaactgtttttcttctctccataGATCTAGTTTGTCACTTGGaccacaatttatttatttcacttttttttttttcactagaTTAACTACTAGAGATGA

Function

GO: NA

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 81221 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 83177 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 134595 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 292940 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 490988 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 114763 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 118094 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 164576 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 179621 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 194471 14704960 ~ 14705185 (+) True G41084
AMCG00012936 mRNA upstream 27973 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 59818 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012934 mRNA upstream 84007 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 138174 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012930 mRNA upstream 154203 14315841 ~ 14324873 (+) True AMCG00012930
AMCG00012940 mRNA downstream 6294 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012942 mRNA downstream 64104 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 142355 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012947 mRNA downstream 270076 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 287223 14797712 ~ 14811683 (+) True AMCG00012946
TU51090 other upstream 45875 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 1943147 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 1988654 12489799 ~ 12490422 (+) False AMCG00012894
TU50139 other upstream 4034629 10436907 ~ 10444447 (+) False G40224
TU51114 other downstream 17673 14528162 ~ 14529806 (+) False AMCG00012940
TU51166 other downstream 121868 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 620306 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 966690 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 1110296 15620785 ~ 15630627 (+) False AMCG00012982

Expression Profile