RNA id: AMCG00012940


Basic Information

Item Value
RNA id AMCG00012940
length 2288
RNA type mRNA
GC content 0.52
exon number 16
gene id AMCG00012940
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14516783 ~ 14529806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAGCACATCGCAGAGGATACAGCTCATACCAGCAGACGGCAGCATGGCATTGGCACATCGCATACAGATTGTCACGGACCAGCAGACCGGGCAGAAGATCCAGATCGTCACAGCGCTGGATCAGGCGGGCGCAGGGAAACAGTACATCTTGACCAACACAGATGCCTCTACACAAGGCAAAGTGATCCTGGCCAGGCAAGAGCACTCCCAGGGAAAGGTCATCCTGGCTTCTCCTGATGGCTCGGGCGTCAACCAGTTGCTGTTCACGTCCCAGGACATGGCCACCCAGCAGATCCAGATCGTGACAGACTCTGGCTCTGCGGATCTGTCTCCTTCCAAACCGATCATCGAGTATTGTGTGGTGTGTGGGGACAAGGCTTCAGGGAGACACTACGGTGCAGTGAGCTGCGAGGGCTGCAAGGGATTTTTCAAAAGAAGCATCAGAAAAAACCTAGTGTACACCTGCAGGGGCACGAGGGAGTGCGTCATCAACAAGCACCATCGCAACCGCTGCCAGTACTGCCGGCTGCAGCGCTGCATCGCCTTCGGGATGAAGCAGGACTCTGTGCAGTGTGAACGGAAGCCTGTCGAAGTCTCCCGAGAGAAGTCTGTGAACTGTGCCGCCTCAACTGAGAAGATCTACATCCGGAAGAATCTGTGCAGTCCCCTTGCGGCCACGCCCACGTTCGTGACGGACAAGGAGACCGCGCGGTCTGCCAATTTGCTGGAGTCAGGAATGCTCTTAAACATCCAGCAGCCTTTCCCAAAAGTGGAAAACACAGTCATGATGTCATCACCGGAAAAGAGCGACTCGTTTCAGGGCGATTTAAGTACACTGGCCAATGTTGTGACGTCCCTTGCACACCTCAGCAAGACCAGAGAGATGAGTGACAGCAGCGCAGACCTATCGGTGATTGAGACATTAAGCAATGGCGACAATTCAATAGCAGAAATTCAAACGGAAGAGCAAACCAGTGATATAACAAGGGCATTCGATACTCTTGCTAAGGCCCTGAACCCGGGAGACCATCCTCACGTCGAGCACATGGAGGCCAGCATGCACCTCGTGTCTGGAGACCAGTCGGGCAGCGTGCTGGAGATGGACGGCCCTCTGCTGTCGGACATTCACGTGGCTTTCAAGCTCACTATGCCTTTGCCAATGCCTGAGTACCTCAATGTTAATTACATCTGTGAATCCGCTTCAAGATTGCTGTTCCTCTCCATGCACTGGGTTCGCTCAATTCCTGCTTTCCAGGCACTGGGGCAGGACAATGACACCAATCTGATGAAGGCCTGCTGGAACGAGCTTTTTGCCCTCGGTCTGGCGCAGTGCTCACAGATTATGAACGTGGCCACCATTTTAGCTGCTATTATAAACCACCTCCAGAGCAGTTTACAGGAAGATAAACTCTCACCAGAAAGGGTGAAGATTGTAATGGAGCATATCTGGAGAATGCAAGAGTTCTGTAACGGCATGGCTAAGCTGTCTCTTGACGCTTATGAGTACGCGTATCTGAAAGCGATCGTTCTCTTTAGCCCTGATCATCCAGGTATCGACAATATCCTGCTGATTGAAAAGTTCCAAGAGAAAGCGTACATGGAATTGCAGGACTACGTCACACGGACATACCCAGAAGACACTTACCGGTTATCAAAGCTGCTCCTGAAGCTGCCAGCGCTGAGGCTGATGAGCGCCGCCATCACAGAGGAGCTGTTCTTCGCCGGCCTCATCGGCAACGTGCAGATCGACAGCATCATCCCCTACATCCTCAAAATGGACTCCGCCGACTACAACAACCAGATCATCACCTCCATCGTAGTAAACGATGTTAAAACTGGAGCTCTTGTTGGAGTAGACAAATACGGGAACAAGTATTATGAAGACAATCGGTACTTTTTTGGCCGCCACAGATGGGTCATCTACACTGAAGAGATGAATGGCAAAAGAACTGTCTGGGAGGTAGATGGAAGCATGGTCCCACCTGAATGGCACCGCTGGCTGCACTGCATGACCGCCGACCCGCCGACCACACACCCCCTGCAGCCCCGCAAGTTCATCTGGCAGGATCACCGGTTTAACCTGAGTGGCACGGCAGCCCAGTACGTGCCCTTCTCCACCACCCGCAAGAAGGTCCACGAGTGGGTCCCACCACCGCTGTCCAGCAAGTGAGAAACCTTGCCTGCGTagcccatatatatataaactgtttgGACATGATCCTGCGGATACTCTGTGCTTTCCAGTCTCACTTCTGAtactaattaaattatatatacaagtAA

Function

GO: NA

KEGG:

id description
K08543 NR2C1, TR2; testicular receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 118928 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 120884 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 172302 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 330647 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 528695 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 95479 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 98810 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 145292 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 160337 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 175187 14704960 ~ 14705185 (+) True G41084
AMCG00012939 mRNA upstream 6294 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 65680 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 97525 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012934 mRNA upstream 121714 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 175881 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012942 mRNA downstream 44820 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 123071 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012947 mRNA downstream 250792 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 267939 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 304717 14834490 ~ 14851076 (+) True AMCG00012945
TU51090 other upstream 83582 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 1980854 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 2026361 12489799 ~ 12490422 (+) False AMCG00012894
TU50139 other upstream 4072336 10436907 ~ 10444447 (+) False G40224
TU51166 other downstream 102584 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 601022 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 947406 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 1091012 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4495788 19025561 ~ 19029278 (+) True G41978

Expression Profile