RNA id: TU51114



Basic Information


Item Value
RNA id TU51114
length 615
RNA type TUCP
GC content 0.50
exon number 4
gene id AMCG00012940
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14516783 ~ 14529806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTCTGCCAGTGTTGCTTCCGGCCTAAAATGGCGGAGTATGTGCAGGTCGCTCGGAGGGCTGTGGGACAGCTAGGAGGTCATGGGGGAATACGCGGTTTGTTATATCAGCTTTTGagAGTAAACGATGTTAAAACTGGAGCTCTTGTTGGAGTAGACAAATACGGGAACAAGTATTATGAAGACAATCGGTACTTTTTTGGCCGCCACAGATGGGTCATCTACACTGAAGAGATGAATGGCAAAAGAACTGTCTGGGAGGTAGATGGAAGCATGGTCCCACCTGAATGGCACCGCTGGCTGCACTGCATGACCGCCGACCCGCCGACCACACACCCCCTGCAGCCCCGCAAGTTCATCTGGCAGGATCACCGGTTTAACCTGAGTGGCACGGCAGCCCAGTACGTGCCCTTCTCCACCACCCGCAAGAAGGTCCACGAGTGGGTCCCACCACCGCTGTCCAGCAAGTGAGAAACCTTGCCTGCGTagcccatatatatataaactgtttgGACATGATCCTGCGGATACTCTGTGCTTTCCAGTCTCACTTCTGAtactaattaaattatatatacaagtAATGTGTTTGAGTAATTATTGCAGTTTTGTGTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51080 lncRNA upstream 130307 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 132263 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 183681 14340946 ~ 14344481 (+) True G40963
TU50999 lncRNA upstream 342026 14185240 ~ 14186136 (+) True G40920
TU50918 lncRNA upstream 540074 13986950 ~ 13988088 (+) True G40846
TU51159 lncRNA downstream 95446 14625252 ~ 14625850 (+) True G41054
TU51165 lncRNA downstream 98777 14628583 ~ 14630610 (+) True G41058
TU51185 lncRNA downstream 145259 14675065 ~ 14677245 (+) True G41075
TU51196 lncRNA downstream 160304 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 175154 14704960 ~ 14705185 (+) True G41084
AMCG00012939 mRNA upstream 17673 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 77059 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 108904 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012934 mRNA upstream 133093 14366098 ~ 14395069 (+) True AMCG00012934
AMCG00012928 mRNA upstream 187260 14332782 ~ 14340902 (+) True AMCG00012928
AMCG00012942 mRNA downstream 44787 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012941 mRNA downstream 123038 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012947 mRNA downstream 250759 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 267906 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 304684 14834490 ~ 14851076 (+) True AMCG00012945
TU51090 other upstream 94961 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 1992233 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 2037740 12489799 ~ 12490422 (+) False AMCG00012894
TU50138 other upstream 4083715 10436907 ~ 10444447 (+) True G40224
TU50139 other upstream 4083715 10436907 ~ 10444447 (+) False G40224
TU51166 other downstream 102551 14632357 ~ 14633413 (+) True G41059
TU51320 other downstream 600989 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 947373 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 1090979 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4495755 19025561 ~ 19029278 (+) True G41978

Expression Profile