RNA id: AMCG00012941


Basic Information

Item Value
RNA id AMCG00012941
length 2273
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00012941
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14652844 ~ 14681647 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCAAGCAGCTGCTGTTGAGCTCCTTGGCAAGTAAATGAGAGACTCGACACCACATGTTTACACGACTAGGCTGTGCCGTTATTTCAGCGTTGAAAGGTCCCCTAGGTGAGGTAACCCTCTGGGATGACATCAgggcaggaggaggagcctGTTGCCAGACACCCTTCAATTGCCCAGAGAGACCTATCTGCCGGCATGATGAATCCCTCTGCTCTAGCACAGTCGGCGCCCCTGTTTCCAGCCATGGCCGCTGTGAGCAGTAACCCCGCTGGAATGCATGGGAGTCCGGGGATTGGAGCCTCTGACATGGAGTTGCAGAAGATGCTGATTGACGAAAGGATGCGGTGCGAGCATCACAAAACCAACTATCAAACGCTCAAAGCTGAACACACAAAgCTGCAGGATGAGTTCGCGCGGGCACAGGGCGACCTGAAGCACCTGCTGATGGAGAAACGCACAGCGCAGGAGAAGATGCAGCTGCTGTTCGCTGAACTCCGGGGAGAGCTGTTAGATAAAACAAGGGAGCTAGAGGAGCTGAAAATGCAGGTTCTCACTCCACCAAAACTGGAGCTGCTGCGAGCTCAGATCCAACAGGACTTGGAGACGCCGATGAGAGAGCGATTCAACAAGCTGGAAGAGGAAGCAGAAAAATACAGGTCTGATTACAACAAGCTGCGCTATGAGTACACTTTCTTAAAGTCCGAGTTCGAGCACCAAAAGGCAGAACATGCCCACACATTGGAAGAAAGAAACATCCGGTTTGAGACGGAGTTATCCAGATTGGAAAAGGACAAGGAAGAGCTGAGCAATCAGCTTCTGAGCACAGATCCTACCAGAGACACCAAGCGTGTTGAGTCTCTGCTGCGTGAGAAGGCCCAGCTGCACCAGAGGCTGCGGAGCCTGGAGGCCGAGGTGGCGGAGCTACGGGCGGAGAGGGACAACTCTGGGCTGCAGGCCGAGAACGTGCAGAGGATCCAGGTGCGACAGCTGGCTGAATCGCAGGCTGCTGTCAAGTCACTGGAGGCAGAGAAGCAGTCTCTGAAGCTACAACTGGAACGCCTCGAGCGAGAGTTGCAGCTCAGTCATGAGCACAACGCCCAGCTCACTGGCAAACTGCACAAGACCGAGCGCGAGGCCAGTGCTCTCACCAGCAAAgtgGAGGAACTCAAACACACCCATAAGATTGAGGTGGCTAATATTAAGCTGGAGTGTGTGAGGTCAAAGGGCGAGGTGGAGAGGGAGCGAGACGGCCTGCACAGCCAAGTTGAGGGACTGCAGGCAGACGTGGATATCCTGAAGATCACCGTTGACAGGAACAAGGAGCTCCTGTCTGAGAAGGAGCGTGAGTTAGTGCGCAAAGTGCAGGCCGCCAGGGAGGAGGAGCTTCACAAGCTGGCAGCACTGCAGGATGAAAAGCTGGAGCTGGAGAGCTGCGTGgcagagctggagcagcagaGGGCATCACAGGAGGCTGCTGGGAATTCGGACAGGGAGCAGTGTCAGGAGAAGCTGCGTGCCGCCCAGTTGAGCGAGGAGAGCGCTAGAAAAGACGCCCAGAACCTGAGTGCCTTGTCGCACTCCGAGAATGACCTGCTGGACACGAATCGCCGACTGAAGGAGTTGCTGGAGCGGCTGAAGGAGGAGCTGCGAAACGCCCGTGGACAGGCGGAGAGGGCGCAGCACGAGGCAGAGAAGCTGCTGGAGGACCGGCGCATTGAGTGGCTGCAGGAGAAGCACCAGCTGCAGGAGCAGGATGCGCAGCTGCAGGAGAAGCACAGCCAGGTCAAGGAGAAGCTGCACAGGGCTGCCGCTGCCCAGAAAAAGGTATCCGCCCTGACGCTGATGCTGCGCCGACACCATGGTGACCACCCCGCCCGTGGTTCCCTGGGTCCTGCACTCTCTTCCCACTGTGGGAATAGGAAGACGTTGACTGAAAGCAAGCAGAAGCGAATGCAGGACAAAATCCAGCTGCTAGAAGCGAAGATACAAGAATTAGAGATTGAGAACAGCACCTTAAACAAGAAGCCGGCCTACGCTGCGGACCAGGCCCAGCTCCACAGGAGGATGAAGGAGCTGCAGCGCCGGCACAACGAGTTCCGCCGCCTCCTCCTGGGCCCCACAGCCACAGCAGCAGGGATGACCCACTCGGCTGCTTTCCTCTCGTCCACTTTAGTGCCAGGGGCTGAAATGACTTTCCCCAATCTCCAAAAAGAGGACGTCCAGAAAGAGGCTTTTCTCTTCCTGTGCGACAGtaaGGAGCCCAGTGTCTGA

Function

GO: NA

KEGG:

id description
K16754 CEP83, CCDC41; centrosomal protein CEP83

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51165 lncRNA upstream 22234 14628583 ~ 14630610 (+) True G41058
TU51159 lncRNA upstream 26994 14625252 ~ 14625850 (+) True G41054
TU51080 lncRNA upstream 254989 14397597 ~ 14397855 (+) True G40989
TU51077 lncRNA upstream 256945 14395576 ~ 14395899 (+) True G40986
TU51050 lncRNA upstream 308363 14340946 ~ 14344481 (+) True G40963
TU51196 lncRNA downstream 8463 14690110 ~ 14690674 (+) True G41082
TU51199 lncRNA downstream 23313 14704960 ~ 14705185 (+) True G41084
TU51207 lncRNA downstream 46535 14728182 ~ 14728449 (+) True G41092
TU51211 lncRNA downstream 54174 14735821 ~ 14736661 (+) True G41096
TU51290 lncRNA downstream 244678 14926325 ~ 14955039 (+) True G41158
AMCG00012942 mRNA upstream 72616 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 123071 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012939 mRNA upstream 142355 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 201741 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012935 mRNA upstream 233586 14405558 ~ 14419258 (+) True AMCG00012935
AMCG00012947 mRNA downstream 98918 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012946 mRNA downstream 116065 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 152843 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012949 mRNA downstream 197115 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012952 mRNA downstream 293063 14974710 ~ 14975822 (+) True AMCG00012952
TU51166 other upstream 19431 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 123038 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 219643 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2116915 12488575 ~ 12535929 (+) True G40629
TU50637 other upstream 2162422 12489799 ~ 12490422 (+) False AMCG00012894
TU51320 other downstream 449148 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 795532 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 939138 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4343914 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6588028 21269675 ~ 21278728 (+) True G42326

Expression Profile