RNA id: AMCG00012943


Basic Information

Item Value
RNA id AMCG00012943
length 5582
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00012943
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14757801 ~ 14772607 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTGAAGTGTCCCTGACGGGTTAGAGCCATCAAAAAAtagacacataaataaataaatcgacaCAATTACgagtacaataaatacatgaaaacacatACACTAAACGACAAATGCAAAGACATACAGATCTGCCGCGCAGTCCGAGAAGACGTCCGCAGGCGCGCCGGGGCTGTTAGCCGCTGCCGTCACGGCGCTGTTCGCCCGAGTGTGGGGGAGCGCCGTCGTGCTTTATATGAGTCTCGGCTCTGTCGTCCATTGTCCAGTAGATACTTGTGCGGCAGCCGGATGGGTGCAGTCCTGTGTCGTCGACGGGCAGTGCAGCGCCGCGGCGGGATGTCTCGGTGGGCATGAAGCCCCGTGCCCGCTGCCCCCCGCTGCCCCCGCACGCGCCGCAGGTGGAAACGCACATTTTCCCTGAAATTGCGAGGCTCTCCTTGGAAGTTttttcacttattattattacatttggtGTGTGAATGTGGAATACATCTCAAGAAGGAAAAAACCTACAAAGTTTGTCGGATGCTGATCGGTGGATGCCAGGGAGCTACCCAATGACCTGCCATTCTCCTGACTCCACCGAAACCATAGAAAACCACCGGAGATCGGACACGGAATCCAGGGCGCTAGATAACGACCAGAGCCGCATTGCAGCAGCCATGAGAGACCTGAAAAAGACAGGTTGGTACTGGGGGAGTTTAACTGCCAATGAAGCTAAAGAGATACTCCAGGACACAGCCGAAGGCACCTTCCTTGTCAGGGATAGCTCACAGAGGGACTACCTGTTTACAATCTCTGCAAAAACGTCAGTGGGGCCAACCAACCTGCGCATAGAGTACAGGGACGGCAAGTTCAAACTGGACTCTGTGCTGTTCATTAAGCCAAAGTTGAAGCAGTTTGACAGCGTTGTGCACCTAATAGAACACTATGTGTTTCTATCGAAAACTTCAAAAGGCTCGGAGTCCATTCGTCCACCCAATGGCACCGTGCAGCTCCTGTTGACCAAGCCAATTTATGCATCGACTCCCTCGCTCCAGCATCTCTGTAGGATTTCTATTAACAAGACAACCAAAAGGATTCAGGAACTGCCTTTGCCTAACAGACTCAAAGATTACATTACAGACTACACTTATCATGTTTGATAAGATGCATAAATAACTCAGTACATGCATTCAGAACCTGTATAATACCTGTTTtaatgtgctgttttatttttttgtactgtagCATTATTAGGGAAAAGTGTTTTCAAATCATACTGCTTTTTGGTGAAGTTAACACAAATTTAACTGCAAGCAATATTCAAAACTatacaagtacatttttaaacgttattttttattattattattattattattattattattattattattattattactattattattattttgtatcttgCATTAGCTATATCAGTTTTACCTGAGATGAAATGTTGGCATTTCATTGGCCATTCAATATTATCAGTATTTGGTGCGGACTTGTTGGTCTCGTTTCAAAGTTTCACTGCATTTGTGcctcaaattaattaattcccaTGTTTTTGATTGtcaatagaataaaaaaaagagatacTGACAAGCAATAGCTCATAAACAAAGGTTTAGTCTGCTGTGCCAAATACTGCTCACATGTATTCGCCAAGTCTGATTTTGTTGATTTCATCTGCTGACAATGCAGATTTCTCTTTTAAACATTGgcaaaaagacatttaaatgtcacaatagccattttaattgaaaaactatttgtacacatttgaaatctttatttaatctcaGGGAGGCTGATACTTTTACAGTAAGTGATGTGATTTAATTAGATAACTGTGTTAAACCAGTACAGTGTCTGAAGCTGTTACATTGAAAATGGCCAAACAGCAGGCTCCCAGTGCCATTTTGGAGAAAAACATCAGCACCTTAAACCAGAAGGCTTTCATTTCACCATCTTCCTTCAGATGTCCGTCTCTTACAGGGGACCTCCAGATTCAAGGGAGTTATCAaccattttatttcacacttcAGTGTGTTGAAGTAATGCAGGACAGTGAGAGCCCTCTGGCTGAGTGTTTCTCCACAGAATGCAGGTGAAATGCAACCGGCAATGTTTTTCGATGATAAAATTAAAACGACACAAGACAAAATATGTTGTAAAGGCATATGCCGAGGCTGTGCAAATACAAAGAGGAAAAATACTGCGCATAACTGTGAAGTTGTTTAGGCCCTGAACCCATCGTATACATAATCATAAGTAATTAATCTGCTAGACGGGTATTGTGGAAGGAAGTCCCAAGGAATGATCTGTATTATTCCTCGTTCTTCATTACAGTGATTGTTTGCGTGTTGCAATGCTCACTGatatgagatttttttttttttttggggacTGAGCtggttttttttctctctgtcatcGTATCTGCAATACAGAAAAGCAGAGGAACTTGGATTTCAGTATTATTATCAGGGTAAAAATAAGTATGTTTACATGATGAGAAATattcagcaaaacaaatgtattcaagaAACTGTTTCAGAAAAGTGTTTCTTTGAAAAGGCCAGTTGCCGGTTGCATGACAAGGCAGCTACAGTTCTGTTAAGCTGCCTTTTCATGCATGTTGGCAATTTAGTCTTACCCCTTTAAATCTGTCAGTTAAAGCACAGTATTTGGCATGACTGAAATGTACACGACAACAAAGCTTATGAGCGCCACAGATCTGGAAGACACAGggtacagtttgtttttggcATCGAAACAGAACTTTCTAGTTGGATGTTTCCTGGAAATAGTCTTTTGGAATTTTCTGGTACAACTTCCCTAAACCATGTTCTTGTGATCTGTGATACCTGAGTACATTTTTGGAAGACAGTTTTCTCAGATTTCTAATGCTCATGTAACCATACTCAGTGTCAAGTGTTCTGCAGTTAAACATGAGAgatcaatattatatatatatatatctttctaaGAATAGCACACCAATGTTGGCATTATGTGGGCATAAGGTAAAGAAATTCCTTTCTCTAAAAAGTGATGTTTGGTGGTATTCAAATTTCTACGTGGAAACTCTAAAGTATAGAAATGGGAAAGACATTGACCAAGCAGCATTGCATGTAAAGATTACTGGTGACAGCCTAAAATGTGAGAGCAGCATTTGAAGGGTTAATGTGCTGGTTCTCCGGGATCAGTGCAATATAAAGAGGTGTGTGCGTTATTTTATACTGAAATTGTAACTGTGCATCCAAAAGGTGTCCTTAAATACACTTACTGTATCAGTAGACACTCTGATGTTTGATTTCACCGTTCATGAAGTCAAGGACCTATTTTTAACACTATTGGCTGAAGATCAGATGCAGTACTGTAAATGCTTAGTGTAATCCACTGTGATTTCCTGATCACACAAATATAATACCTGGATTTCTTGGAGTTGTAACGGGGCTCACAGTGTCTGAGGTCATTAATGTGACGTCACCCCTCTCCGAGCTGGGTAGAGCATACAAAACCCCCATGGCAGGGGACCAGTCTCTAGGCGTAGTGGTGCGTTGCTCTGCTGGGGTGCATGAGATGGCGTTTCAAATGAGAGCAGGGGGCTCTGGTCCACACGCACTACAGTGGCATAGTCTTGGTCTTGGACTCAAACATGAGCCCATTTACCTGTTAATCTCCGATCATTTGGCCCTCAGTCAAAATGTAAGGTTAATGTTTTtgatctgtacattttaaacctgGTCACAGCACAAAACATTCAGATTTAATCTGTGCGTTGAACGTCtataataaatgaaatgatAAGCAGCCCCTTTCACCCTGCTGCGTGACTTCTCTGTTGTTCTCATTATTATATGACTTCCAGATGATGTGAAGAGATTGAAAGGGAAGTAATTTTAATTCTGAACACATTGACTGTAGTCTGtcacttaaatgtaaaataaatgaaaccttatAACTAATAATCATTATTCCAGACAAATTTTAATGTGCCAGGTGCAGTAGCTCCTGTTCTTATTCATGCTatagcattttgtgttttttttttttttggtggctTTAATACCTTTAAGTAAACAGACACTGAGGTTCTCAGACACTTACATCTCATATTTCTATAGCAAGAGTACTGTGTCCTTGCTATATGACCTCAATCATGTCCAAAGCTGTAGAAGAGCAGGTCTCTGTGAGTTATGAAATAAGATTAGCATTTTCTCtgcatattaaataattaactgattACAATAATCCTTTGGCAGAAGTGGAATAATGGCTGTTGgagcaaatataaaaaaaaatgtaatatgttttcGGAACCTAAATTAATTCCTTATACTACTTGCTAAGGGGGTAAATTGAATTCACAGTCTGTGACAGATTAGAGTATtctttgcaatacattttcagtttaagatattttgttttgtattaagtatttgtGGATGCCCTAGCTTTTCGTGATTTTTTtgagaataataaaacactggcACTTCGCTTGAAATCCCCCCGAACAATGCGAGCTCCGATCCATATGAAAATTCTGTGATAGTGGTGAAATATACATATGTGCCGGATTCCTTATTTCGTTTCACCCAGgaatttaatttcagtgctTCAATCAATACACATCGACCCTGTTAATTAGCCAGATTATCACAGATCTCTGTGGAGTAAATCTCACGATGTACAGTATGAATTATAAGCAGTCATTTTCAAGATCTGCAGCACATTATCTTGTCCATATGCAATGATGCCAATGCTTTCTTAGCTTCCACAGCTGTTCTTTTTCTTAACTACAGAGAGCTACAGGCTTAGAATGCAGACCAAGGGTGGAGATTGTGCAAAAGGTTTCCAtactttttgtctgtgtgtctactAATCCTAACAAATCCAACTCTGTTGTAATctacaaacagaaatggaaagtAAAACTGTTGAAGgcatatttgttatttttttacattcatttttttttctgtgccttTTGAAAATGTGATAGAACCCATCCttgtctaaattaattaaaatgaaagaatcaATGAAAacctcaatgtttttttttcttttatatttatcttgCCATTAGTATTTTAATATCAGTGGAATAAAAATTCTCTAATCCATACTTCAGTAATTCATGCATGTAAGACTGGTATTGAGACTAAAttgtctgcaaaataaaataaacaaattggaGATGTCAAAATGTTCCAAGGAATGTCTCTTGATCTTCCAGTCAGGATTTTTGTAGTAACTGCTGTTATTTACTAGCTgttgcttgttttcatttctaagAAAAATCTGTATGGTAttcttttctatttattttagaaatatatttgaacCACTCCCTCCTCAGCCTTAGGGCTGTCAATGGTGTATTGTTTCACAGCCAAAACTGGTTTGACACAGCTTTTAATCTTCCTTGAAAACACAACCGTTGTGGAAAGACTGCTTTTAGAACATTCTAGTTCATCTGCGGTAAAGTTGGGTTAAAAAGGACACCATTACATGTTGGCTTAATGTGACTTGTTGCCTTTTTTATACTTtgcttgcaaaaataaactgattattctaaaaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04695 SOCS2, CIS2; suppressor of cytokine signaling 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51218 lncRNA downstream 21172 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 40237 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 169675 14587845 ~ 14588126 (-) True G41047
TU51122 lncRNA downstream 228028 14528154 ~ 14529773 (-) True G41020
TU51133 lncRNA downstream 247116 14508557 ~ 14510685 (-) True G41030
TU51268 lncRNA upstream 69636 14842243 ~ 14922316 (-) True G41138
TU51335 lncRNA upstream 302827 15075434 ~ 15077820 (-) True G41191
TU51378 lncRNA upstream 463013 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 464683 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 793902 15566509 ~ 15569851 (-) True G41369
AMCG00012944 mRNA downstream 55199 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012937 mRNA downstream 283220 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012938 mRNA downstream 324645 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012931 mRNA downstream 413369 14340416 ~ 14344432 (-) True AMCG00012931
AMCG00012932 mRNA downstream 425999 14326065 ~ 14331802 (-) True AMCG00012932
AMCG00012948 mRNA upstream 22435 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012955 mRNA upstream 279356 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012956 mRNA upstream 305491 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012959 mRNA upstream 393343 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012958 mRNA upstream 403681 15176288 ~ 15212332 (-) True AMCG00012958
TU50830 other downstream 1642314 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2504358 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5644725 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8301623 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12573638 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 3107618 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 3181456 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3403454 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3470143 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 4204453 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile