RNA id: AMCG00012945


Basic Information

Item Value
RNA id AMCG00012945
length 4744
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00012945
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14834490 ~ 14851076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCACAAAACCCAAATTGTCAAGAGTGGTGAAGGAGAAATAGGCCAAAAGCATATACACCTGTCAGGGAAGATGGACATCAGTGACAGATTCGGCGGCAGCTGTGTGTACAAGCAGGGGGCGAGAGATGACACCTGCGATGAGAAGCCTGACAGACCTGGGGCCGAGGAGCCGACTGCAAAGGACAAAGAGACAACAGGactgaaggaaaaggaaaaagaggaaaaggaatgcgaggagaaagaagagaaaaccGCCAGTGATGGGAAAGAACGTGATGAATGTGAGGAAAAGCCGGAGAAAGAAGTGGAAGAGGAGAAAAAGCAGCATGAGCTGAAGGCCGGGGAAGATGAAGATGAGGATCTGATtcctgaggaggaggaggaagaggaggagctgCACCTGGAAGATCTGAAGTCCCAAGTCCTTCAGCTGGTtgtggagctggaggaggcccgggaCATGTCCCACAAACACCAGGAGAGCTTCCAAGAGCTACAAGGACTGCTGGAGGATGAGCGCATGGCCAGCGCACAGCAGGCAGAGACCTTCACCAGGCAGATACAGAGGCTGCAAGcccAGCTGCGCTCCGTGCAGGAGGAGATGGACAGCctggaggaagagaaggagagcgAGCTGGCCGAGGCGCAGGAGGAGCTGCGGGCCGCCCAGGAAGAGGTGCTGGTCCTGCAGCAGGCCGCAGAGGAGGCCGCCGCGGAGCGTGAGAACGACATTGCCAGCCTGCAGGAGGAGCTGTGCCGCATGCGGGCTGAGTTGCAGCGCCTGCATGCCACCACACAGGAGTACGAGCTGGAGATCACCAGCCTGCGAGCTGAGATCCGCATGAAGAGTCAGAGCGGCCGGGCCAGCAAGGACGAAGGGGAGCCCCTGCAAGGTGACCTGAAGCAATTGAGGGACGAGTGCCAGAGCCTGAAGTGTGAGTGTCAGACTCTCAAGGATGACAACAAACAGCTTCTGGAGAAACTGAAGCTTCTGCAGCTGCAGAGATCTGGGTCTAATGATGTGTATCTGGCCCTGAGAGAAGAAGCACTGAGCGGCGAAGGGGAGGCTCATCTCCTCTGCAGGAAGGATGCGGAGGGGGGCACTGAAGACCTGTTTGAAGTGCGCAAGGCAGGGAGCTACATGACCATGACGGAGCCCCGGACGAACTGCAAGCTGGTGGATGTGTCGATCCAAAAGAATATCTCCTTTGATGGGAAACCGCTGACACCGACGAGCATGAATGGGGGCTTCTTGGAGATCTACTCGCTAAGAGACCAGCTGAAACAAGCGGAGGAGAGGGCCTTGAAAGTGCAGAAAGAGTGTGACAGCCTCAAGGGGGAGCTGCTGGAACTGCAGGGCCGCTACACGAGCAGCCAGAAGGAGAGAGCCGACCTGGAGAGGGAGCTTCAGAGATGCCGGGAGGAGCTAGAAAAGCTCACAGGCAAGAAAATGCAGGTGAGAGGGGGCCTGGAGCTCAGGCTTTTGGGGAAATACCTCTGGGTGGGGGGCTTTCTCCACAGCAGCAGAGATGCCCATTTGGTGATCTGTGAGGCAGTGTGAGTGACCCAGGCCTGTCTCCGGGCAGTGAGGATCACCGTCTCTAGAGGGTCGGAGGGAGCCTGGAGTCCGTTGATGGTGGTGGCTGTAGCTGCGGCCGTGGTGCTGATTTTCCCTAGTCTGACCAGAGCGCTCTCCTGAGGACCTCACAGCTGCCCCTCCCGCCAGCTGTCTTCCTCCGGGCTCAGCACTCCCCCTCCGCATTGCTTTTCTCCCTACACTCACATACTGCCGAGCTTTAGGCCCAGGACTCTCTTTAGTGTAGCTGAGGAGGCTCCGATCTCAGGAACGCCTTCCTCAGAACAGTTGGGAGAAGAGGATTGACTCCGTGGATTGACTGGAAGAACGACTGCCATGTTAGAAATGTAAGCACAGACTTTTTTTGGTTTCCGGATTAGTGGCGGGACACTTTCTCGAAACATCGTTAGAGCATGATTCATCGGGAGAGATTCAGCGAACCGTGATGCTGATCACTGCATATCTTGACATCTAGTCTTATGATCTTGTAAATGTGCTGAtctacctttttttttaattgcttgctGCACTAATTCaccatttcttttatttttaaaatggcatcCTTTCTTTCTGCAGAATCACTCGCAGTGCTTCTATAACTACTCTCCTGTGACCAGGCAGTGTACTGATTTGCACGGGACTTTAAATAGAACTGTCTTCATTTTACATGATGCATTGTTCAACaagggttatttatttatttatttggcttcatGTAAAATATCATGTGAAGacagtgaaaacatttaaatactggAGTTTAAGAACTGGTAGCTAAGTGGCTTAGGACAGAAATTCCCATTAcgttcataaaaatgtattttccacatCCCAGGGCATGCAACTGAAAACAGGGCTTTACCAAATCCAGACGCAAGAGATCAATATTATATGGCGAAAGATTTGAAACATAAAAACTTgtcacatttcagaaaacaaatacaaaattatctGGCTCAAGGGAATGAATGCTTTTTTCATCACACATACTACCACTCCttctcttttaaatgtataaaaagacaaagttttttcttagatttaaaaaaCCTTTGAGAGGTCTGTTTATATTCCTATGATGTGTTATAACACTGTTATAAACTCACTGCTTCAGTCACACTTGCCCTTAGCAGTCCCTCTGgtgatataattaattaattaaccaacAGCCTATGTTTTGTGAGAAAATCCCCACAAATCATGGCTTTGCCAGTGAATAGTTTCAGTTTAACAACCCGAAgtgaaacaatgtatttcatttactCCATTATATTTTCTGTCACATAGTCGGCTATGCCCCATATTCTGTTGATTTCCAGAGCCTTGTAGTGTTACACTGAATCCAGTGTCCACCCAGGCCCTGCGTTTGGGACCAGCTCGCCCCTGTGGCTGTGAATCCTGCAGGTCAGGCCTCACTGCGTCTGAATGCAGCCCATATTTCTTGTGGTGTTTGGCTGCAACCCACCTTTACATCCTAACCCTTCATTGACTCAACTCTTGGCTGCTCCAAGTCATTCTGCGTTGGCTAGCTGCCTTCTTCTTTGTGGCTGCATTTTCCAGTCTGTGGCTCGATGGTTTTCCAGCCAATATCCCCCGAGCCTCTCCAAGCAATTATGGTCCACTTATTCAACTATTCAACTGTTATACCCTATCAATCAATCACCAGCCTGTCGTACTAATGGATTGCTTTCCTATCacagaaataatgcaataaacaCATCTGTGCACAGCTGATGTTATCAATCTAATATTAATCTATAATGTAAAAttgatcaaataataaaaagcaatgaGGCAGATGTTAACCCCAAGATTACAACTGAGGAGTTAAATCCAAACACTCTGCCATgttgaaattatatttgtgaGCTGTGGTCTTTTCAGCACATTCCAGAAACTTTTTTTACATAATCTACTTGGTTTTTGGACTGGAGAAAGGAATAGGGATGGATTAGTGACTTGTGCAAGTGTAGCTGCTGGCAGCCGGGACTGTGTCTACAAAAGGCCAAGTGTCAAAGCACACTTAATCTTTAAAGGACAATCCCTTTATATCACATTGTGATGTTTCAATGTGCAGTAAATGAGTCATGACAGTTACctataagtatatataataaaacaattactataatttatttttaatggcacaaaacattttagaccATTACTATGTGTTATTCTTAATGGCACAAAACAGTTAAGCTGACTTGGCACAACTTCTGAGAAATAGTTTGAAACTGCCTGGGGATGTTTGTTAAATATCTACTGAAATAATAACGTTTCTACTTAAATTGGTAATTTAGACAATATTTCTAAGAAAATATGGGTGATTTGCGAATGTATCAGCTATCTTGTAATGTTTCTATGTTCTTTTGCACTTTTTCCAGATCAGATTTGGAATGCTTCGGCATGGTTTGCGAACGATGTTCTGGTCTTCTGTTTTCTCTATCTCTCATTtgagtatttttaatgtaaagctaaaataaacaacaaacaatgctATATCAGTCTACTAGTAAAACTTTCCCTTagttaaactttaatttagaaCAAGTACAGTTGCACCTTGCTGTTAGATATCATAATTAGCCCGTATCTAATTACTGTAGGCTATTCTCCGAGTCAGTTAATTTAGGGCAACCTGGTTTATATCTCCACATAAACCAGGCCAGCCGGTAATTCAGTGTCCACTGTGAATTTGAAAGGTACACCTTGCCTTTCCCAGATGTAGACTTCAGGTTGTACAAAGTGAAACCCACCAGTGAACATCACACTTGACTGATATCGCTGTGACTGATAAACACTTTGTGATGTATCTAGTGTCTCTAAACTTGTATTCAGTCGCCTCAGCCATAACTGTTCATTGTAATTAGGAGGTATTTTCTAGTTAGCCAGAATTGTATACATTATCTGCAAAATGATTGTTTAGATTACTTTCACTGGACTGGCTCTTAGGGCACCTGGAGGCTAAAGACTGAACTATATAGTCATACCTCACAACATTGCTCTGTGGTTAAGAAATCAAAATCCTAATCATAGTTCATTGAGCTGGACACACTATTCTGTAAGCTGTTTTTCTTACAAAAAATGCATCTGTGCTCTTTTTATTTATCCACCTTTTCTAGAgatatcaaattattattattattattattattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51211 lncRNA upstream 97829 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 106041 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 129305 14704960 ~ 14705185 (+) True G41084
TU51196 lncRNA upstream 143816 14690110 ~ 14690674 (+) True G41082
TU51185 lncRNA upstream 157245 14675065 ~ 14677245 (+) True G41075
TU51290 lncRNA downstream 75249 14926325 ~ 14955039 (+) True G41158
TU51327 lncRNA downstream 309360 15160436 ~ 15166469 (+) True G41184
TU51380 lncRNA downstream 386211 15237287 ~ 15283968 (+) False G41225
TU51381 lncRNA downstream 386211 15237287 ~ 15285288 (+) False G41225
TU51384 lncRNA downstream 397302 15248378 ~ 15264573 (+) True G41226
AMCG00012946 mRNA upstream 22807 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012947 mRNA upstream 41102 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012941 mRNA upstream 152843 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012942 mRNA upstream 254262 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 304717 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012949 mRNA downstream 27686 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012952 mRNA downstream 123634 14974710 ~ 14975822 (+) True AMCG00012952
AMCG00012951 mRNA downstream 191943 15043019 ~ 15048845 (+) True AMCG00012951
AMCG00012950 mRNA downstream 216014 15067090 ~ 15076878 (+) True AMCG00012950
AMCG00012954 mRNA downstream 230343 15081419 ~ 15135177 (+) True AMCG00012954
TU51166 other upstream 201077 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 304684 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 401289 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2298561 12488575 ~ 12535929 (+) True G40629
TU51320 other downstream 279719 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 626103 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 769709 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4174485 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6418599 21269675 ~ 21278728 (+) True G42326

Expression Profile