RNA id: AMCG00012946


Basic Information

Item Value
RNA id AMCG00012946
length 2670
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00012946
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14797712 ~ 14811683 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGCAGAGCAGTTCCTGACAATCGTCCAAACTCAGCCGCCTGAAGACATCCAGCTCTATCTGAAAGAGCACTTTGTCGACACCAACTACTGCGATCAGTTCTCCAACACAGCCCTGCACTATGCAGCTTGCAGGAGGAGCCGGGAGGTGGTCGCTTTGTTGGTCGAGACGGGGGGACAAGTACTCAAGGAGAACGCGGAGGGACTCACTCCAATTCATTTTGCTGCTTTTGGAGGGAACAAGGGGGTACTTCAGTATCTGCTTGTGAAGGCACCACAGGCTGTCAATCACAGGGGCCTCAAGAATCTCTCCTCGCCCCTTCATGAGGCTGTGTCCGGGAAGACAGTGCAGGCAGTTGAGTTTCTGCTGTCCCAGGGAGCAGACTGTAACCTGCAGAACCAGgaTGGCAATACTCCACTCCATCTTGCGGCCTCTCAGAGATCTAAATGCATCTGCTCTTTACTCCTGCAAAGTGGGGCCAACGTCCTGCTGAAGAATAAGAAAGGAGACACCTGTCTGCACTGTGCTGCGGCCACAGGAGCCCTCTCCATCTGTCAGATGCTGGTTCAGAAAGGGGCCTCCATTCAGGCAAGGAATAAGAATGGTGAGACAGCTGTTTTCAGTGCTGTGAGGAGTGCAGGAGCATCACCTGGAGACAGTGGGAGTGAATTAATCAGCTGGCTGATAGAAGAATCAGGACCATTCCTAACATATAGGAACAAGGATGAACTTACCGTGCTGGACGTGGCCAGACAGAAGCATCTCCCTTCCAAGACTGAGGTTTTGATCAAAGACAGAATGAAGGAACTGCAGATTCAGAGTCTCTTGAAGGAGAGCAAAGTAGTGGACAGTAGGAGAGTTGTCAAACTGTTCATCTGTGGAAACTCTGGAGTCGGGAAGACCACGCTCGCAAAGACCTTGAAGCAGCAGCGCTGGTTTAACAGGCCGCCGTCCCCTCCTTCCACGCGCGGTGTTGCCATTACACGGAGTGACCTCGCAGCAGGGCGGGTGGTGGTCTGGGACTTCGCTGGACAGATGGAGTACTACTTCACGCACTCGCTGCTGTTGTCCGCTAACAGCGGGAATGTCCTCTACTGTATTGTCTTCAACCTGGAGCAGATCCAGTGTGCCAAGGGAGGCACTCACTGTGAAGCTCTCGGTTCTGTACTGGCTGCGCTTTCTAAATTCCTCCTGGGGCTGCAGTGTCCCACACAGAGCCAAGTGACTCACTTCTTTGATATTGTGCGCTGTCACGTGAAGGAGCTGCAGGTTAACCTAGACATCGACACAGCAGTGATCAGCATGAACTGTAAATCCCCCAGCGATCTCCAGCCTCTGAGACAGAGGCTTGAGGAGTGTGTGGAGCAGCTCGCACAGGATACAGCCAGTCCATTTCCTGAAATATGTGGTGAAGTGATGGACGAAATCTACAACATCAGAGTGAGGGATTGTgttaAGTACTTATCCTTGGAAGATTTTGTGACTTCTGTGAGAAGTGTGGCAGAAAATGTCAGCGCTGAAACTCTCAGGATGGCTGTGGAGTACCTGCATAATATCTCAGAGTGGCTCTGCCAGGATATCTTTGGCAAGTTTGGACACTTTGCACTTTCCACACTGCCACTGCAGCAAGAGAAGTGGACCACTGCGGAAATAGCAGCCGTGCTGAAGTTGGACCGTTCCCCGGAGACTGTTGTCAGGTTACTGGAGATGCTGGAGCTCGTCTTCAGTGACCGGGAAGGGGAATATATTGTGCCAGCCTGGCTGAGAAAGGGAAAACCTGCGAACATTTGGGACAGAGAGGAGGGTTTTAACGTGTACTGCGGAGTGTCCTACCGATGGAGGGGCAACCTAGGCCTCTTTTCTCAGGCTTTCTTCTCCCAGCTCCAGATGCGGCTGATGAAACTGTTCATTCACACAGCAGGGGAATGCGCATCTGCTGAGAGGTTTGTCGTCTGGGCTGGGGGTATCAAGTGTGTCGACGTGTCCGAAGCGCTCGTGCAGCTCTCTGCTAACCGCAGGTCGGTCAATGTAGCAGTGAGAGGCCACAGACCGCAGACACACCGGGGCCGGGCTCGGGACACACAGCAGAAGTGTTGCGACCTGCAGGAGATGATCTCCCGTCAAGTGGAGTGCTTGCTGAAGGACCTCATGATGGATCATGAGTGGGAGAGGCTGTACCTCAGCCCCAGGGACATCCTTGCCAAAATGGATGCTTCTGACGATGACATCACAGCCTACACGACAGAAGAAATCCTGGAGAGTGAACGGAGTGGGACAAACCTTTACTCCAAGCTCAGAGGCTGGGAGGAATGCCTCTGCGATGTCCTGTTGGCTGGTTATGATAAGACCATCCTTCAGGGGGTGAAGTGGGATGCTACCATTCAGTGGCTGACAGCTGATAAGATTGAGGGCCTCTGTGCCCTGCTGGACCCTGTTCACCCACTGGGTCATGACTGGAAGGGTCTGATGGAGCGTCTCGAGAGCTGCACGTATGAACACATTGCAGCTCTCACTGCCCAGTCTGAGCAGACCAGGGCATCTCCcacactgctgctgcttcaGAAAAACCGCCGCATCACCCTCCGCAGCCTCCACAGTGCGCTACAGCAGATAAACAGGGAGGACTGCATGAGTGTGATTAAAAGCATGTTTGACAGCCTGCTGTAG

Function

GO:      GO:0008536

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51211 lncRNA upstream 61051 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 69263 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 92527 14704960 ~ 14705185 (+) True G41084
TU51196 lncRNA upstream 107038 14690110 ~ 14690674 (+) True G41082
TU51185 lncRNA upstream 120467 14675065 ~ 14677245 (+) True G41075
TU51290 lncRNA downstream 114642 14926325 ~ 14955039 (+) True G41158
TU51327 lncRNA downstream 348753 15160436 ~ 15166469 (+) True G41184
TU51380 lncRNA downstream 425604 15237287 ~ 15283968 (+) False G41225
TU51381 lncRNA downstream 425604 15237287 ~ 15285288 (+) False G41225
TU51384 lncRNA downstream 436695 15248378 ~ 15264573 (+) True G41226
AMCG00012947 mRNA upstream 4324 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012941 mRNA upstream 116065 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012942 mRNA upstream 217484 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 267939 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012939 mRNA upstream 287223 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012945 mRNA downstream 22807 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012949 mRNA downstream 67079 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012952 mRNA downstream 163027 14974710 ~ 14975822 (+) True AMCG00012952
AMCG00012951 mRNA downstream 231336 15043019 ~ 15048845 (+) True AMCG00012951
AMCG00012950 mRNA downstream 255407 15067090 ~ 15076878 (+) True AMCG00012950
TU51166 other upstream 164299 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 267906 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 364511 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2261783 12488575 ~ 12535929 (+) True G40629
TU51320 other downstream 319112 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 665496 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 809102 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4213878 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6457992 21269675 ~ 21278728 (+) True G42326

Expression Profile