RNA id: AMCG00012947


Basic Information

Item Value
RNA id AMCG00012947
length 1934
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00012947
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14780565 ~ 14793388 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTACGGTGGTTAGTGTTTGACAATGAGCGTCACAAGACGTGGTGCGTCAGGCACGTAATGACGCAGCACGCACGCGGGAAAACCAAAAATGGCCGGAGCGCGGTTGTTTGAAATCTTCTTAACAGGAATCTGAATAACAGCAACTCAGGGGGTATATTTGTAAGCAATCGAAGAAGgatttgtattaaaaagaaaatggatgaTGCCGAATCAAGATTCACTCACCTTCTCCAGCCCATCCGGGATCTGACCAAGAACTGGGAGGTTGATGTGGCTGCTCAGCTTGGGGAATACCTAGATGAGCTGGATCAGATCTCAATCTCCTTTGATGGAGGGAAAACTACAATGAACTTTGCAGAGGCGGCCCTGCTCATTCAGGGGTCAGCCTGTATCTACAGTAAAAAGGTGGAATATTTGTACTCTCTGGTCTGTCAAGCCCTGGACTTCGtctcaaataaaaaACGGGACAGACAAGTGGCCTCGGTGGGGCAGGATGGTGTGGACAACGATGCCACCTTCGCCTACAGGAACGAAGAGGAGGAGtTCCTGTCTTTGGATGACATCAGTAACGGGAGCAAAACAAGCGTAGACCTGAAGAGAGACACCAATCCCAACgCTGTTGAAATAGTCCCCCTAACTCCCATGGCTCTGGTGGCTGCAGAAGACGCTGAGAAAAAGATCAATCCCCTTTACAGCCGAAACGGAGAGATCCTCGGCAGCTGTAAGGATTTCCGTATGAACACCTACACACCCCACGGCCAAGGGACCTTCCTGCTGGATCTGGCTGAAATGACTCCTTTGCAGTTTCTAAGGGATTTGCATATGAACAACCAAAACAATTCAGTTCTCAATGGAGCCCCCATGGACCTGAATGGGAACATGCCGCAAGACCTGACAGACCATGAGGCTCCACTCCCTGTGCTAAATTTATCACCCAGAGAGGACAGAGATCCTCCTTGTGATGATGCTGCAGACTGGTTCATTCCTCTTGAAGATGACAATGGGATGGAGGTGGAGCCAGGCTccgacacacacatagacagacaTCAGGCTCCCAGTGACCGGTATCTGCTGAGAGAGAGGATCCCTCCTGAGCCACCAGCAGAGAAGACAGCCAAGGAAGCCCTGGACCCGTGGAGGAGCCTTGATCCGTTCTCCTGTTCTGAAGACAAGCCCCTTAAAAAAGGCAAACACTATACGGTACCTCGGAGCGTCCAGGAAACGGACGGTAacaagaggaaaaggaaaagtccTTCAAAGCTGCTGGACTTCATGAAGTGGCTCTCGGGAGCATACATGGAGTTATTGTACTGGAAACACATGAAAGAGAAACTAGCAGCACAGAGGAAATTACTGAAGAAAAAGGGTGCTCTATATCCCAACGAGGCTCCGGAGCAACCGCACAACGTGGGGGGTGATGAAGAGGAGAGAGACGAAGCTGAAGTAGTCCGGCACGATGACTATCTGGATAATGATCAGGGGGATGTCTCTGGACCTGAGGACTTCGTAGACGAACCGGAAGAAATTGCGGAGGACCAGGACCTGGTTATAACGGCGTCTCAGGGGGACGTCCTGAATTATGAGGATTTGGTCAGAAAAAACGTGGATCTGTTCATTGCCAACTCTCAGAAGTACGCACAGGAGACGGTGCTGTCTCTCAGGGTGAAGGAGTGGGAAGACAAGATGGGCCCCCAGCTCACTGCACAGGAAGAGAGACTAGCTTTTGACATCCACGATTATGGGAATAAGATCATAGACGCCTTCAGCTGCGTTTCAGAGAGACGGACGTTTGCCTCCATCGTGAGAGGGAAGGAAGAGTTTGAGGTGTGCCGTTACATGCTGGCGTCTCTGCAGCTGGCAAATGACTACACAGTAGAGATCCACAAAAACGCAGGGCTGGAGGAAGCGATTGACACCATGGAGTCTGGGTAG

Function

GO: NA

KEGG:

id description
K11490 NCAPH2; condensin-2 complex subunit H2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51211 lncRNA upstream 43904 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 52116 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 75380 14704960 ~ 14705185 (+) True G41084
TU51196 lncRNA upstream 89891 14690110 ~ 14690674 (+) True G41082
TU51185 lncRNA upstream 103320 14675065 ~ 14677245 (+) True G41075
TU51290 lncRNA downstream 132937 14926325 ~ 14955039 (+) True G41158
TU51327 lncRNA downstream 367048 15160436 ~ 15166469 (+) True G41184
TU51380 lncRNA downstream 443899 15237287 ~ 15283968 (+) False G41225
TU51381 lncRNA downstream 443899 15237287 ~ 15285288 (+) False G41225
TU51384 lncRNA downstream 454990 15248378 ~ 15264573 (+) True G41226
AMCG00012941 mRNA upstream 98918 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012942 mRNA upstream 200337 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012940 mRNA upstream 250792 14516783 ~ 14529773 (+) True AMCG00012940
AMCG00012939 mRNA upstream 270076 14479076 ~ 14510489 (+) True AMCG00012939
AMCG00012936 mRNA upstream 329462 14433803 ~ 14451103 (+) True AMCG00012936
AMCG00012946 mRNA downstream 4324 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012945 mRNA downstream 41102 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012949 mRNA downstream 85374 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012952 mRNA downstream 181322 14974710 ~ 14975822 (+) True AMCG00012952
AMCG00012951 mRNA downstream 249631 15043019 ~ 15048845 (+) True AMCG00012951
TU51166 other upstream 147152 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 250759 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 347364 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2244636 12488575 ~ 12535929 (+) True G40629
TU51320 other downstream 337407 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 683791 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 827397 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4232173 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6476287 21269675 ~ 21278728 (+) True G42326

Expression Profile