RNA id: AMCG00012949


Basic Information

Item Value
RNA id AMCG00012949
length 9466
RNA type mRNA
GC content 0.51
exon number 46
gene id AMCG00012949
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14878762 ~ 14922962 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTTTCCCCTTGACAGACAGCAAAGCCATTGTGGATGGGAACCTGAAGCTCATCCTGGGTTTGATATGGACTCTCATCCTGCACTACTCCATCTCTATGCCCATGTGGGAagatgaggatgaggaagatGCCAAGAAGCAGACGCCAAAGCAAAGGCTGCTGGGATGGATCCAGAACAAGATCCCACAGATGCCCATTACTAACTTCCATCGCGACTGGAAGGATGGCAAGGCCCTGGGAGCGCTGGTGGACAACTGTGCTCCAGGTCTGTGCCCTGACTGGGAAACCTGGGACCCTAACCAGCCCGTGGAGAATGCCAGAGAGGCCATGCAGCAGGCTGATGATTGGCTGGGTGTGCCGCAGTTCCCCAAAGCCAAGCTGAAACCCGGAGCTCCTCTCCGCTCCAAACAACTCAACCCCAAGAAAGCCAAGGCCTACGGTCCAGGGATTGAACCCCAGGGTAACATTGTGTTGAAGCCAGCTCAATTCACTGTGGAGACAATCGAAGCTGGCCTAGGAGAGGTGCTTGTCTATGTGGAAGACCCAGAGGGCCACACTGAGGAGgCGAGAGTTGTTGCCAACAATGATAAAAACAGAACCTACTCTGTAACCTATGTTCCCAAGGTAGCAGGGCTTCATAAGGTGACTGTGCTGTTTGCCGGCCAGAATATTGACAAGAGCCCCTTCATGGTCAATGTTTCCATGGCACTCGGAGACTCCAACAAAGTGTCTGCCCGGGGGCCCGGTCTGGAGCCAGTGGGCAACGTGGCCAACAAGCCCAcatattttgacatttacaCAGCAGGTGCTGGGGCCGGCGATGTGGGTGTGGTTATTGTGGATCCCCAGGGACGGCGTGACACTGTGGAGGTCATCCTGGAAGACAAAGGGGACAGCATTTTCCGTTGCACTTACCGCCCTATTCTGGAAGGACCCCACACCATCTACGTAACCTTCGCTGGGGCTCAGATTCCTAAAAGCCCCTTTCCTGTCAATATCTCTGAAGCCTGCAACCCCAATGCCTGTCGAGCCACAGGTCGAGGCCTGCAGCCCAAGGGGATTAGGGTGAAGGAGGTGGCTGACTTCAAAGTCTTCACTAAGGGAGCTGGGAGTGGAGAACTGAAAGTGCTCATTAAGGGGCCAAAGGGAGGTGAGGAGCCTGTGAAAGTGCGGGAAGTGGGCGATGGAGTGTTTGAGTGTGATTATTACCCAGTGGTCCCGGGGAAATACACGGTTACCATCACGTGGGGAGGCTACGCCATTCCAAGGAGCCCCTTCGAGGTGCTGGTCAGTGAGGATGCTGGAGCGCAGAAGGTCCGGGCCTGGGGGCCTGGACTGGAGACGGGGGTGGTGGGAAAGTCAGCAGATTTTGTTGTAGAAGCCATTGGAACCGAAGTGGGAACTCTTGGTTTCTCCATCGAGGGTCCCTCCCAAGCTAAGATTGAGTGTGATGACAAAGGCGATGGGTCCTGTGACGTGCGATACTGGCCCACAGAGCCTGGTGACTATGCCGTCCATGTCATCTGTGATGATGAAGATATCAAAGACAGCCCCTTCATGGCCCACATCTTGCCTGCTGCCAATGACATCTTCCCTGAAAAGGTGAAAGCCTTTGGCCCAGGACTGGAGCCTACGGGCTGCATTGTAAACAAGCCTGCGGAGTTCACCATAGATGCCCGTGGAGCTGGCAAAGCGGAACTCAGGATCTACGCCCAGGACGCTGAAGGATTACCGATTGATATCCAGATAACCGACAACGGAGACAACACTTTTCTCTGTGTTTATGTTCCAACTAAGCCAATCAAGCACACTATCATCATAACCTGGGGAGAAGTGAATATACCAAACAGCCCAttcaggGTGAACATAGGGGAAGGCAGTCACCCAGAGAATGTCAAAGTGTACGGACCAGGAGTGGAAAAAACGGGTCTGAAAGCCAATGAACCGACATACTTCACTGTGGACTGCACTGAGGCAGGGCAAGGTGACGTGAGCATTGGTATCAAATGCGCTCCTGGTGTAGTTGGTCCTGCTGAAGCAGACATTGACTTCGACATCATCAAGAATGACAATGACACCTTCACTGTGAAATACACCCCCCCCGGAGCAGGTCGCTACACCATTATGGAAATTCCCATCAGCCCCTTCCGTATTAAAGTTGATCCATCCCACGATGCTGCAAAGGTGAGGGCAGAGGGCCCAGGACTGAACAGAACAGGTGTGGAAGTGGGCAAGCCGACCCACTTCACGGTGTACACCAAGGGTGCTGGCAAAGCCAAGCTGGATGTTCATTTTACGGGGGCTGCGAAGGGAGACGCTGTGCGTGACTTTGAGATCATTGACAACCATGACTACTCCTACACTGTGAGAtacactgcagtgcagcagGGGAACATGAGCATCTCAGTAACCCATGGTGGAGATCCCATTCCCAAGAGTCCCTTCAACATCACTGTGGCACCACCCCTTGATCTCAACAAGGTCAAAGTTCAAGGTCTTAACAACAaAGTGGATGTTGGGAAGGATCAGGAGTTTTCTGTCAATACCCGCGGGGCTGGGGGGCAGGGGAAGGTCGATGTGCAGATCACCTCTCCTTCTCGACGGCCCATCCCCTGTAAGGTGGAAAGTGGCACCGCCAATGATGTGCACTCAGTGAAGTACATGCCCCCCGAGGAGGGGCCCTATAAGGTGGAAGTGAGCTACGATGGAAACCCTGTGCCTGGGAGCCCCTTCACTGTGGAGGGAGTCATGCCCCCTGATCCATCCAAGgtGCGTGCTTACGGGCCTGGTCTGAAGGGTGGTATAGTGGGCAAACCAGCTCCCTTTGCCATTGACACTAAAGGTGCCGGCACTGGGGGGCTCGGGCTCACAGTGGAAGGCCCCTGTGAGGCGAAGATCGAGTGCCAGGACAACGGCGACGGCTCCTGCTCTGTGTCCTACCTGCCCACCGAGCCGGGCGAGTACTCCATCAACATCCTGTTCGCCGAGGCGCACATCCCCGGCTCTCCTTTCAAAGCTGCCATCAAGCCAGTCTTCGACCCCAGCAAAGTGACAGCCAGTGGGCCGGGCCTGGAGCGGGGCAAGGTCAACGAGGCCGGGTCCTTCACGGTGGACTGCTCCAAGGCCGGAGACGCTGAGCTGACCATTGAGATCATCTCAGACTCCGGGGCCAAGGCAGAGGTGCACATCCAGAACAACAGCGATGGCACATACTCCATTACCTACATCCCACCTTTCCACGGCATGTACACCATCACCATCAAGTACGGAGGACACTCGGTGCCCAAGTTCCCAGCCCGTGTCCAGGTGGATCCAGCGGTGGACACCAGTGGGGTGAAAGTGTACGGGCCAGGAGTGGAGCCAAGAGGGGTCCTTCGTGAAGTGACCACCCACTTCACTGTAGACGCACGGGCACAAAACAAGACTGGGGGCACTCATGTGAAAGCCAGGATTGTTAACCCTTCGGGAGCCAAAACAGATGCCTACATCACTGATAAGGCGGACGGCACTTACAGGGTGGAGTACACAGCCTACGAAGACGGTATGCACCTGATCGAAGTCCTGTACGATGATGTGGCCGTTCCCAAGAGCCCTTTCAGAGTGGCGGTCACTGAGGGCTGCGACCCTACCCGTGTTAGAGCCTATGGGCCTGGCCTCGAGGGAGGCCTTGTCAACAAGCCCAATCGCTTCACTGTGGAGACGAGGGGTGCAGGGACTGGGGGCTTAGGCCTGGCTATTGAGGGCCCTTCTGAGGCCAAGATGTCCTGCAAAGACAACAAAGATGGCAGCTGCAGTGTGGAGTACATCCCCTTCACACCAGGAGACTATGATGTCAACATTACCTTTGGGGGACGGCCTATTCCAGGGAGCCCATTCCGGGTGCCTGTGAAGGAGGTGGTCGACCCCAGCAAGGTGAAGTGCTCAGGCCCTGGACTGGGGACTGGGGTGCGAGCCCACATCCCACAGACCTTCACTGTGGACAGCAGCAAGGCAGGCCTGGCCCCGCTGGAGGTGCTGCTGTTTGGGCCCGCAGGAGTGGCAGAACCTGTTAATGTCAAAGACAATGGAGACGGTACACACACTGTTAATTACACTCCCGCCATGGATGGTCCTTACACTGTCTCCGTCAAATACGCTGATCAGGAAGTCCCTCGCAGCCCATTTAAGATTAAGGTTCTGCCTACCCATGATGCCAGTAAGGTGCGTGCCAGTGGCCCAGGGCTCAACGCCTCTGGAGTACCTGCCAGTTTGCCTGTGGAGTTCACCATTGATGCCCGGGATGCTGGTGAAGGACTTCTGACTGTGCAGATCCTAGACCCCGAAGGGAAACCCAAAAAGGCCAATATCCGTGACAATGGAGACGGGACCTACACGGTGTCCTATGTACCAGACATGACAGGCCGCTACACCATTACCATCAAGTATGGTGGAGATGAGATCCCATACTCTCCGTACCGCATTCACGCTCTGCCTACTGGGGATGCCAGCAAGTGCTTGGTTACAGtttCTATTGGAGGACACGGTTTAGGTACAGGCCTCGGACCCACCATTCAGATCGGCGAGGAGACGGTTATCACTGTGGACGCAAAGGCTGCTGGGAAGGGCAAAGTGACCTGCAAGGTGTCCACCCCCGATGGAGCAGAGCTGGATGTTGACGTGGTGGAGAACTCGGACGGCACCTTTGACATTTATTACACAGCTCCAGAGCCAGGCAAATACATCATTACCATCCGCTTCGGAGGGGAGCATATTCCCAACAGCCCCTTCCACGTTGTGGCCACAGAAGAGCCCATTGCTCCTGCTGACGGGATCGAGCCGATTCTCAGACCCTTCAACCTGGTGATTCCTTTCACAGTGCAGAAAGGAGAGATAACAGGTGAAGTTCGGATGCCCTCTGGCAAGACTGCCCGTCCTGATATAACTGATAACAAGGACGGCACAGTCACGGTTAAATATGCACCAACAGAGAAAGGTCTGCATGAGATGGACATTAAATACGACGGAAACCATATACCAGGAAGCCCCCTCCAGTTCTATGTGGATGCTATAAACAGTGGTCATGTGACTGCCTATGGCCCAGGCTTGAGTCATGGTATGGTGAACAAGCCTGCCACATTCACTATTGTAACGAAGGACGCGGGCGAAGGCGGGTTGTCCCTTGCTGTGGAAGGTCCATCTAAAGCGGAGATCACCTGTAAGGATAACAAGGATGGCACCTGCACAGTCTCCTACCTGCCCACTGCACCTGGGGACTACAACATCATCGTCAAGTTCGATGACAAGCACATCCCTGGGAGTCCTTTCACCGCCAAAATCACAGGAGATGACTCCATGAGGACGTCTCAGCTCAATGTCGGCACAGCAACAGATGTCTCCTTGAAGATCACAGAGACTGATCTCAGCTCACTGACGGCCAGTATCAGAGCGCCGTCTGGGAATGAGGAGCCCTGCCTGCTGAAGAGGCTGCCCAACAGGCACATTGGTATTTCATTCACACCCAAGGAAGTGGGAGAGCATGTGGTCAGCGTGAGGAAGAATGGCAAGCACGTCACCAACAGCCCCTTCAAGATCATGGTGGGCCAGTCGGAGATTGGAGATGCCAGCAAAGTGAAGGTGTCAGGAAAGGGGCTGGTGGAAGGCCGCACCTTTGAGGTGTCCGAGTTCATCGTGGACACGAGGAATGCAGGTTACGGAGGTCTTGGATTGTCCATTGAAGGTCCTAGCAAAGTGGATATAAACTGTGACGATGTGGAGGATGGCACGTGCAAAGTGACCTACTGTCCCACCGAACCTGGGAACTACATCATCAATATCAAATTTGCTGAGCAGCACGTGCCTGGAAGTCCGTTCACAGTCAAGGTGACAGGAGAGGGAAGAATGAAGGAGAGCATTACCAGGAAACGGCAGGCGCCCTCCATTGCAAGCGTAGGCAGCACATGTGACCTCAATCTCAAAATTCCAGGGAACTGGTTCCAGATGGTGTCGGCCCAGGAGCGGCTGACTCGCACTTTCACACGCAGCAGCCACACCTACACGCGCACCGAGCGCACCGAGATCAGCAAGACGCGGGGAGGAGGGACCAAGAGGGAGGTGCGGGTGGAGGAGTCCACCCAGGTCGGCGGAGACCCCTTCCACGATGTCTTTGGAGAGTTCATGGGCCGAGAAAGCCTGGGGACCTTCAGCGGCATTCCCAGACCAGAGGGAGAAGCCGGCACCCAGGAGATGACAGCCCAGGTCACGAGCCCTGGAGGGAAGACGGATGATGCTGAGATCATCGAGGGAGAAGACAGCACCTACAGTGTGCGATTTGTACCCCAGGAGATGGGCCCTCACACGGTCAATGTGAAGTACCGGGGGCAGCATGTTCCTGGCAGCCCCTTCCAGTTCACCGTTGGACCTCTGGGAGAAGGTGGAGCCCACAAGGTCAGGGCTGGAGGCACAGGACTGGACCGGGGGGTGGCTGGAGTCCCAGCCGAGTTTAGTATCTGGACACGAGAGGCAGGTGCCGGAGGTCTGTCTATAGCTGTGGAAGGACCCAGCAAAGCCGAGATATCCTTTGAAGACAGGAAGGATGGGTCATGTGGAGTCTCCTATATTGTCCAGGAACCAGGTGATTATGAGGTGTCAATCAAGTTCAATGATGAACACATCCCTGACAGTCCCTTCATTGTGCCGATTGCTACACTTTCTGATGATGCACGAAGACTCACTGTCACCAGTCTTCAGGAGACTGGACTGAAGGTCAACCAACCAGCATCCTTCGCAGTGCAACTGAACGGAGCCAGGGGAGTGATTGAAGCCAAAGTTCACACGCCATCTGGGGCTGTAGAGGAGTGCTATGTCTCTGAGCTGGATAGCGATAAGTACACCATCCGCTTCATTCCACATGAGAACGGGGTCCACTCCATCGACGTGAAGTTCAACGGCAGCCATATCCCTGGCAGCCCCTTCAAAATCCGGGTGGGAGAGCCAGGACAGGCTGGGGATCCGGGCCTTGTGTCTGCATTTGGGCCAGGCCTGGAGGGAGGAACCACAGGAGTACCTTCAGAATTCATTGTGAACACCTGCAATGCTGGCTCTGGGGCCCTCTCTGTCACCATCGACGGGCCCTCAAAGGTGAAGATGGACTGTAATGAGTGCCCAGAGGGGTATAAAGTCATGTACACTCCCATGGCTCCTGGAAACTATTTAATTTCCATCAAATACGGGGGACCTCAGCACATTGTAGGCAGCCCCTTCAAAGCAAAAGTCAcagGTACCCGTCTGTCAGGAGGCCACAGCCTACACGAGACCTCATCCGTTCTGGTAGAAACAGTGACTAAAACCGCCACAGTGGGGGGGTACAGCACCATGCCGAAGTTCTCCTCTGATGCCAGTAAAGTTGTGTCAAGAGGTGCCGGACTCTCCAAAGCCTTTGTGGGGCAGAAAAACACTTTCACAGTGGACTGCAGTAAAGCAGGGACTAACATGCTAATGGTGGGAGTGCACGGTCCAAAGACGCCTTGCGAAGAAGTGTACGTGAAGCACATGGGCAACAGGATGTACAATGTTACCTACACAGTCAAGGAAAAGGGGGACTACATCCTCATTGTCAAATGGGGGGATGAAAACGTGCCAGGAAGCCCCTTCCACGTCACCGTACCTTAACCAGCACCTACAACCCTCGCTATGCAACCTGGAAGGACCTACCCCGAAATGCactaataaaaaagcaaaacatttttttaaaggaatttgCATTTTAAGCAATGTGCCAAATCTTTACGTTAACATatactattaaaaaaagcattaaggTATTGCAGTAGATGAAGATGAATGTAGAGATCACTTTTACAATATgcacaatgaaaaaacaaatcataaatcaGAATCTGCTGAGCATTTCTTTTGGAAGGTCAACCTCATACTAGGCTTAAAGGTTGGTTGTCGCTctttcccccctctttctctctctctctctctctctctctctctctctctctctctctccctctccctctttctctccccctcacaCTAGCCCTCTCTTTTggtaatatttttatatgtttatttttgagatAAAACATGTAGTATGGatattttaaagtgaaactTTTTTAGTTGATATTGGCCGATTCTTGTATTTCAAAAACGTTTTTTTACACTGAAGTGGGCAGGGAGGGGAATCCTTTCTCTAGCTTCATTAACACAGAGATAAAGAAACGGCAGATAAAAAATGCTAACACAGATACAGAATGCCTTGTTTTCTTTTCGAATATGAATATCATATTAAACTAATCCAGGCCAATATcttcttgaaaaaaataaatgtcactttCACAGAGGTCACTGTCAGGTTTAAATGGATACTGGATATTGttggaattaatttattttgtgaaatgtatttttctttttatatgacAAGGAATTTACCTGgataaaaatgaaactgtaaagTGACATTTACAGATTCAGCAACAAGTATGACAGTTTGTTAAaggatttattaaaatataaaacaacacacaaaaaagaaacactgaatGTTCTGACAGTGACTTCTTATCATGCCCTGACCCAACACCGAGGAATGTGATTGGTCAGACTGAAGAATTTCTGATGACAAGACTGTAGCAGTGTTTGTTATGTGAATGTTAAAACAAAGACTTTGCagcaaaacagtattaaagagtgccattttatagtgtttttgtatgtattaaaaatgataaaacctAATTGTTTGATATATTAACCAACTGTTTGGTAAGAATGTGCAGACATAATAAAGGTTTAACTGCTAACTtgccacaaaaaatgaaaacatgtatttattgttgtattttaatttacttaagtTCAACATCTTCAAGTTACCCTTGTGTcaaatttatgaaaatattacCCATAACCAAATATTGAggcagaaaacattttcaagccAGGGTGCTACAAAAAGGTAGTAAACTGGTTTTAATTGTGCCACACTGACCCCCAATGGTTGCAGGGTATAGTTTTCAACAAGCTGAAGGACTTGAATCAATTTAGATATATGGattgtttttaacttaaattaCTTTCCAtaagttacaaaaatataattaaatctgaccttttttttccttcttacgTTTACAGTAAAAGTTGTAATGATTTGTGTTTTCGAAGATCCATTCTTCCATTCCCAATTTTAACTACTATGGGGCCAAGCAAGTATGATTAGAATAAAGTACATGTATTGCAGAATATTGTTTTTGCTCACATCCTGAACTTAAGCCATAGGAAACAGACCATCACACCAGATCCAAGATCTCCAATAACATAGACACAATGAGACAGAGAAGACtttgaaaaaactgaaaaattataATGACTACCACAAGAGTGACAGGATGTTATGTGTGTGAAACtaagtgttttttaattgatacgGGAAGTTAACCCTTGTTTATGAGCTGTCATAACAAACAattcac

Function

GO: NA

KEGG:

id description
K04437 FLNA; filamin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51211 lncRNA upstream 142101 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 150313 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 173577 14704960 ~ 14705185 (+) True G41084
TU51196 lncRNA upstream 188088 14690110 ~ 14690674 (+) True G41082
TU51185 lncRNA upstream 201517 14675065 ~ 14677245 (+) True G41075
TU51290 lncRNA downstream 3363 14926325 ~ 14955039 (+) True G41158
TU51327 lncRNA downstream 237474 15160436 ~ 15166469 (+) True G41184
TU51380 lncRNA downstream 314325 15237287 ~ 15283968 (+) False G41225
TU51381 lncRNA downstream 314325 15237287 ~ 15285288 (+) False G41225
TU51384 lncRNA downstream 325416 15248378 ~ 15264573 (+) True G41226
AMCG00012945 mRNA upstream 27686 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012946 mRNA upstream 67079 14797712 ~ 14811683 (+) True AMCG00012946
AMCG00012947 mRNA upstream 85374 14780565 ~ 14793388 (+) True AMCG00012947
AMCG00012941 mRNA upstream 197115 14652844 ~ 14681647 (+) True AMCG00012941
AMCG00012942 mRNA upstream 298534 14574593 ~ 14580228 (+) True AMCG00012942
AMCG00012952 mRNA downstream 51748 14974710 ~ 14975822 (+) True AMCG00012952
AMCG00012951 mRNA downstream 120057 15043019 ~ 15048845 (+) True AMCG00012951
AMCG00012950 mRNA downstream 144128 15067090 ~ 15076878 (+) True AMCG00012950
AMCG00012954 mRNA downstream 158457 15081419 ~ 15135177 (+) True AMCG00012954
AMCG00012953 mRNA downstream 222518 15145480 ~ 15151823 (+) True AMCG00012953
TU51166 other upstream 245349 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 348956 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 445561 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2342833 12488575 ~ 12535929 (+) True G40629
TU51320 other downstream 207833 15130795 ~ 15136729 (+) False AMCG00012954
TU51437 other downstream 554217 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 697823 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 4102599 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6346713 21269675 ~ 21278728 (+) True G42326

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048069 True 8109 mRNA 0.49 47 NC_007136.7 35020529 ~ 35040600 (+)
grasscarp (Ctenopharyngodon idella) TU386030 True 8902 TUCP 0.47 47 CI01000122 917667 ~ 940628 (+)