RNA id: AMCG00012954


Basic Information

Item Value
RNA id AMCG00012954
length 3042
RNA type mRNA
GC content 0.53
exon number 23
gene id AMCG00012954
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15081419 ~ 15136729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACACATTAAGCCCGTGTGTGCGGAGCTGTGCGGCGGTGCGCCTGGCCCGGGGGGTCCTGCGGGAGCTGGGCGTGCTCCCCCGGGCGCTGTGGCTGCGCCGCCGGCGGGTCTGTGTCCGGCCAGTGCTGCTGGTCCTGCTCGCCGCCGTCCTCTTCTACCAGACCCTGATGGTGGCCAGGGGTCGCTTTAAATGGAGCCAACCGGGATCTGACGAGGGGAATACATCCACCGAAACCGGGGCCCCGAAGGACCACTGGAAGCGAGCCGCGCCGAGAAACTTCGGGCGTCTTGTGTCTTTGCTGGATGTCGTATTAAACCTGACACACgtcGAAACAATCCATCGCAACCAAGCTGGAAGCACCAAAAGGGCAGTGGTCCTGACAGGCTACTACCTAACAACTGGCACAGAGGTACAGCTGTATCAGCGTGTACTAGAGCAGCATGGGTATACAGTCAGTGTATCAAGGCATGCAGAAACCAGCCCTGTACTCAAGCTGAACTACAACCAGCAAGATGGCAGTAGTTGGGATATCCTGATTTGCCTGCAAAGTTCTGAAAGAAGCTGCCTGACTAAGATAGATTTCAATAAACTGCAACCTCTTCAGAAGGTCAACATGATCCCAGGAATTAAGCAGGCATTCTCCAGTAAACACGGGCTGTGCCTTCTTCAGTCTGATGAAAGGCTGTCAGACGTACGGCTTCCAATTTCTGCTCTCGCCTGTGCGGCTCACAGTGTCCGGCCAGGGGACCCCAGCCACCCTGTCAGGGACAAAGGGATCAGGCCTAGTGCCCCTCAGGACCTCTCGGTGGGACAGGATGCCTTTGTCACCGTCCGGGTGTACGTACTCATCACCTCCATAACGCCGCTCACGGTTTTCTTTCATTCCACGGGGCTGGTGAGGACCGAGCCCCAGAAGCACAGCTACGCGGCCAAGttgcatgtgtttttcctgaGAGCTCTTGGGAAAGAAAGCGCACTTCAGGCTTTGATCAACATGAAGGAGACCATTGGGCAGATTGTAATGGCAGCAGCACTGTCTGGGCAAAGCTCATCCACAAGACATCCGACTTTGACAAGGTGTAGGTTCTGTTTTCAGTGGATGACCTTCACTCTGAGCTTCAACTCGTCACTGGTGCCTGAGGTGGTGAAGGTTCAGGATGAGTTAAACTTTGACGATTTAGAGGATCCTATTTTCGATGGCCAAATAACCAAAGAGCTCATCCTGGAGGACGTGCTGAACTTTGTGTTGCCCAGCTTCTCCGAAAGCGATGGCCTACTGCAAacctttcaaaatacattgagGGAATTGGGGGAAACGGCAACTGAAAGATCCGGGACCTTTCGAAttgATAAATGCACAACACCCCATCTCAGGCAGCTGTACACCAACCCTCCCCTGGACCTGACTCCTCCCTTCAGCCCTCGGATCAAAGAGTACCATGCTCAGGTGCCCTTTGATGTCATGACAGTAAAGATTAGAGCCGAACCTATCAACTGTCATTGCCAGGTGCGTCTGGATGAGCGCAAGGGACCCAGGACTGCTAACTACCCCGTTGGCCTGGGCAACAGCAGAATTCGAATCCTGGTGGTGGACGAGTCTGGGGCAGAACCCGTTGTCATGACGATCTACACCCTCAACATTTACAGAGAAAGCCGTCCTGGTCTGCCCATGTTTGGGGACTATGTAGTGTGTGGGTTTGTACAGCCTAAGGAGGTGCCTGAACCCTTCACACAGGTCTCAGCTGGACTGGACCTCCAGCGCACACATGAGAGCTGGCAGGGTTTGCAGCTGCTGTGCCTGATCAGTCAGTGGGGCTCTGGCCCCAGGGGAACAGAGGCAATGGAGGATAGCTTTAAATGCTCCCACATGGCCTCTGATCAGCATTGGCTGCAAGACGTTGCAGGCAGGGACTGTGGACTGATCATACAACCCTCAGAGTCCTGCGGCTTGGCACCAGTCCCCACCCCCCAGCCTTCAGGAGAGTCTGGGGGTCGAGCTCCCTGTCTCTCTGGGGATGCGAGAGGCCGCTGGATCGTTCCTTGCCTTAGCTGCTCCGACAACAGAACCTGTGATTGGAGGGAGGTTACCTGGCAACCTGACCACTGCTACCACCCCCTGCTAGACTGGCCCCAGCTGCAAGCgtgcatgagagagagaaagGTTCTCTTTATTGGGGATTCCACCAATCGAGGCATGATGTACTACCTCTTGGAACATGTGAACGAGACTCTGGGCGATTGGGACAAAGCACATGACACTATAGTCTACCACAATGTGAACAAAGGAAAGACTCTGATCAGCTACTCCTACTACCCTCAGTTCTGGCTGAGTAAAGACCAAAGACccacatttgaaaatgcattacgGCAACTTATTCAGAGatcccGTCCATTGGAGGACTCAGAGCAGACGGTGCTGGTGGTGGGAGGAGTGCAGTGGCTCAGCACCAGTCACCTACAGATCATACACCAGGTCCTGAAAAGGGAGGACCTTCTGAACATCCTCGTTGTGATCAAGTCGCTCGGCATGGGCTTTCACCTGCCCGTGGATGGGGTGCGCTCTCTTGCTCTGGATGGAGTACAAGACCTTTAtcaagaaaatgagaaaattcTTATTGCTGCCAAGCAATATGGCTATGAAGTCATCGATACCTTCAGTATTACGATGGGCCGCTACAAGGAGTTCCTGCAGGGAAGATGTGCATGTCACTTCCATGAGgtaGGGAAGCTGACATTTTCAGATGCACCCCTTCACAGAAAAATGAAGCTCTCCAGACACTCTAGGAAAAATGTGAGCAGTCCCAGCAAGCTACCAGGACTTCAAGACTTTCAGTCAATTTTGAACTCACCGTATCATGTCAAAGGCCCTATAAATCAAGATCTGCACGAATCAAAGGAGACGTCCGAGTGCAGAGCCCCAGTAAGATCAAGTCTGCTCCTCAGACAGAGGCTCCCCGCTTTCCCTCCAGATCAGGCCAAGAAGTACATTCGCTTTGCTTTCCCATTGGCTGAGATGGGAATGACCAAAGACACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51290 lncRNA upstream 126380 14926325 ~ 14955039 (+) True G41158
TU51211 lncRNA upstream 344758 14735821 ~ 14736661 (+) True G41096
TU51207 lncRNA upstream 352970 14728182 ~ 14728449 (+) True G41092
TU51199 lncRNA upstream 376234 14704960 ~ 14705185 (+) True G41084
TU51196 lncRNA upstream 390745 14690110 ~ 14690674 (+) True G41082
TU51327 lncRNA downstream 25259 15160436 ~ 15166469 (+) True G41184
TU51380 lncRNA downstream 102110 15237287 ~ 15283968 (+) False G41225
TU51381 lncRNA downstream 102110 15237287 ~ 15285288 (+) False G41225
TU51384 lncRNA downstream 113201 15248378 ~ 15264573 (+) True G41226
TU51379 lncRNA downstream 125691 15260868 ~ 15285288 (+) True G41225
AMCG00012950 mRNA upstream 4541 15067090 ~ 15076878 (+) True AMCG00012950
AMCG00012951 mRNA upstream 32574 15043019 ~ 15048845 (+) True AMCG00012951
AMCG00012952 mRNA upstream 105597 14974710 ~ 14975822 (+) True AMCG00012952
AMCG00012949 mRNA upstream 158457 14878762 ~ 14922962 (+) True AMCG00012949
AMCG00012945 mRNA upstream 230343 14834490 ~ 14851076 (+) True AMCG00012945
AMCG00012953 mRNA downstream 10303 15145480 ~ 15151823 (+) True AMCG00012953
AMCG00012957 mRNA downstream 77811 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012962 mRNA downstream 125071 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012960 mRNA downstream 139775 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012961 mRNA downstream 162785 15297962 ~ 15317344 (+) True AMCG00012961
TU51166 other upstream 448006 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 551613 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 648218 14428313 ~ 14433201 (+) True G40999
TU50630 other upstream 2545490 12488575 ~ 12535929 (+) True G40629
TU51437 other downstream 342002 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 485608 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3890384 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 6134498 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 6235666 21370843 ~ 21418787 (+) True AMCG00013126

Expression Profile