RNA id: AMCG00012955


Basic Information

Item Value
RNA id AMCG00012955
length 2475
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00012955
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15051963 ~ 15065613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCAGTGACAGCGCCGGAGCTGCTTTCCGTGCTGGGGCCGTGCACTCCTCCAGCGAGAGACTGCGGCTTCTCCCACAACTTTACAGAGCTATACCTCTAATATCAGCATCAGCTTTCTTTTTCTCGTTGAACTGTGTCCTACTGCCTGGTGTACTTTGTTGTGTCTATTTTGGAGACCACAGGCATGGACAGTTGTCCTAGGTTTGGGGGTTTGAAGAGATAAACGATAATGCATTGAAAGATGGTACAGTCATAGatccaaatatatattaaaaaatatatatatatttctgtgatTTTTGCTTATCgctttttcattaatttattttgtaNacttgACACTCGTATGTAAGCAATTTAGCAAGTGGCTCCAGCTTTTGTACCGTGGTCGCTGACTGTAATACAATCTAACACGCTATGGTTTACACACATCAGAAGAAAACACCTGTTATGAATGATGTCAATGTTTTCCCACGGATATAATAACCTGCTTTGAAGAAGACACTGAAGGCAAATCGGAATTAAACATCTGCTTACCACCGTAAAAACGGTGGATTAGGTGCTATGGTGGGCAGTGGTATAAGGATGAGATCGGACCCGCAGTGGAAGATCGCAGGATGGCCAGGGAAGACTCGGTGAAGTGTCTGCGCTGCTTGCTCTATGCACTCAATTTGCTCTTCTGGGTGATGTCATTCTGTGTGTTAGGAGTGGCTGCCTGGCTCAGGGATTACCTTAACAATGTTCTAACATTAACTGCTGACACCAGGCTGGAGGAAGCAGTGATTCTGACATATTCCCCAGTGGTGCATCCAATGATGATTGCTGTGTGCTGTTTTCTAATCATGGTGGGAATGCTGGGATACTGTGGAACTATAAAAGGcaatctgctgctgctgtcatgGTACTTTGGCAGTTTGTTGGTGATGTTCTGCGTGGAGCTGGCCAGTGGGGTGTGGACATATGAGCAGGAACATACAACTCCGGTACAACGCTCTGACATGATCAGTTTAAAATCAAGGATGCCCAATTATGGACTGAGTCGGTACCAGTGGCTAACCCACGCCTGGAATTTCCTGCAGACAGAGTTCCAGTGTTGTGGAGTCATTTATTTCACCGATTGGCTGGAGATGACCGAGATGGAGTGGCCGCCCGACTCCTGCTGTACTAAGAAATATCCTGGCTGTGCGAAACAGGCTCACTATGAAGATCTGAGCGACCTACACCAAGAGGGGTGCGGcccaaaaatatacagtttcaTAAGAGGCACGAAGCAGCTGCAGGCCCTGCGGTTCCTGGGCGTGTCCATTGGGGTGTCCCAGATCCTCGCCATGATCCTCACCATCACCCTGCTCTGGGCGCTCTACTATGGCAGGAGACCTCCCAGGACCGGTCACATGCTGACCTCCAGCAGCGACCCGTCGCGGCACCTGGCCTGTCCGTCACAAGAGCCCCTGAAACCCAGCCCAGCCAGGACCTCGGAGCTGCGCGCTGCTGCAGacaacacccacacacagttTGAGATGGAGCAgctataacaacaacaacaacaacacaaatatatacacacacacattgttctTGAACTGTGACTGAATTTAACTCTAAACCAGTCTTAATCTGATtcatacagaagaaaaaactttccttgaattattttctgcttcatGAACAGAGCGAACTTTGTGCCTTAAGCTGCTATCCAGCAAACCCAAGTGTTCATGTGGATTCTCTCTGTGTAAGGATGAGCAACCTTGAACTTTCACAGGTCAGCACAGTTATAATGTGAAAAAAGGCATTTCAGTCACATCGCAGTGGACAAATCGAGTTTACAAATCTCTTATGAAAATCGTCTTAAAAGTGCTGTAAAATATGGCAAATTTACATGCAGCTTGGAAGTTACTGAAtcttatattaatattttgtgtattaatcTGAAGGtatcttttttttgtgaagTTCAGCAAAGCAAtcataatattgtaatttatcaTAGTAGTCTGACTCCTTAGTGTGAATAAGACTGCATCCCGATgttttaatactgtatattttgcctttttgtGGATATTTTGTTATGCATTTGCTATTGAGTGTGAAGGTATGATGTCACTATTTTCCTTGAAAAGATAAATACCTGGCCTTCCTTTAAATCAGGGGGTTCCCGATGTCTGGTGAAGTTTCCCGaagttgcatgggatggggggccacagtacaaaattaaccaccaattttatttcctacacctttctgttagggaacatttattaactgtaattgttgttttatttttctccccaagttacatgtgcaatttgtaacagaaaatgttcatgaaGTGTACAAATATAGTAAATCTTCggaaaggggtggttgaaggttggctttggggggccacaccaaacatcctcgagggccgcattttgggaacccctgctttaaatactttacaaaaaaataaagtgttttttctcttg

Function

GO:

id name namespace
GO:0045765 regulation of angiogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function

KEGG:

id description
K17355 TSPAN12; tetraspanin-12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51268 lncRNA downstream 129647 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 315334 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 334399 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 463837 14587845 ~ 14588126 (-) True G41047
TU51122 lncRNA downstream 522190 14528154 ~ 14529773 (-) True G41020
TU51335 lncRNA upstream 9821 15075434 ~ 15077820 (-) True G41191
TU51378 lncRNA upstream 170007 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 171677 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 500896 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 573266 15638879 ~ 15639990 (-) True G41386
AMCG00012948 mRNA downstream 255125 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012943 mRNA downstream 279356 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012944 mRNA downstream 349361 14675085 ~ 14702602 (-) True AMCG00012944
AMCG00012937 mRNA downstream 577382 14452415 ~ 14474581 (-) True AMCG00012937
AMCG00012938 mRNA downstream 618807 14424811 ~ 14433156 (-) True AMCG00012938
AMCG00012956 mRNA upstream 12485 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012959 mRNA upstream 100337 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012958 mRNA upstream 110675 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012964 mRNA upstream 153720 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012971 mRNA upstream 201601 15267214 ~ 15304371 (-) True AMCG00012971
TU50830 other downstream 1936476 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2798520 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 5938887 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8595785 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12867800 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2814612 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2888450 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 3110448 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3177137 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3911447 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile