RNA id: AMCG00012958


Basic Information

Item Value
RNA id AMCG00012958
length 3462
RNA type mRNA
GC content 0.42
exon number 17
gene id AMCG00012958
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15176288 ~ 15212332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCCTCAGCCTGGGAGCCGCTGTTACTTCCTCGTCGGGCTGCGAAGATGACTTCGACGCTCTGGGTCCTGGCCGTCTGCTTCCCACTACTTGCAGGTGTATCGGCTGGATTCGCGCCGTACGCCGATCGGACACAGACGTTTTCCAGGACACTGGTAACACGGGAAATAAACCCCAGATTCAGAAGGGATGCTGGAGTCAGAAGTTCCAGCTTCACCCCCAGTGAAGTCACACTGAGCGCAGAAGAGCTGCCCAAACTGGAAGACAACACTCACGAGatCACATTTCTTGATGACGATGGTTCCAGTTTTATTCTGACCTGGGTTGGTGATGGAACTGGTGTTATCCTTGTCTTGTCCACCTACAATCTTCCTGAAGGCTGGTACTTAGGAGTAAGCTCCTCACGCCTATACAGAAGTGAGGACTCTGGGAAAAACTTTCATGATATCTCACATGTCATCAATAACACCTACATACGGAAAGAATTTGGAATCATTGTGGGTCCCGGCAATTCTGGGAGGGGAGATCCTAGAGTAATTTACATCTCCACCGATCAGGGTGACAGCTTTAATCAAGCACAATTACCATCGGCCACAATGGAACAGttctaTTCTGTGCTGGAAGCAGACAATGAGATGATATTTATGCATGTGGATGAGCCAGGAGATACGAATTTTGGAACTGTCTACACATCAGATGCGCAGGGCATCCTGTTCTCCAAATCTCTGGAGCACCACCTGTTTACAATGCTAGGAAAAAGTGACTTCACGAACATCACCTCGCTGCGCGGGGTCTACCTGACCAATGTCATTACAGAAGATGGATATATTCAGTCAGTCATCTCCTATGACAGCGGAGGAGAATGGATATCCTTAAATAAACCAGAAAATGAGGAGTGTGACACATCGGCTCAGAATtGCAATCTGCATATTCACGGGGAGTACAGCGTGTTTAATAACAAGGCTCCCATGACGCCGCTCTCGGACCCAAGTGCTGTTGGCATTATCATTGCTCATGGGAGTGTCGGAGATTCTCTGACCAGACctgatgtgtttgtttctgacGACGGAGGGTACAGCTGGAATAAGACCTTGAAGGGCCCTCATCATTATGCCCTCCTAGATTCTGGAGGGATCATTGTAGCTGTGGAATACTACCCAGAGAAGCCCATCAAAACCATGaaGTTCTCCACTGACGAGGGCCAGTCCTGGAAGTCCTACAATTTTACAGATCTCCCAATCATCTTTGTTGGTCTAGCATCTGAGCCAGGCACCAAGACCATGAACATCAGCATATGGGGTTACAGGCCTGAGGATGAGTACAAAGCAACCTGGGTCTCAGTCACCATTGACTTTGAGGCGCTCCTCAACAGAGACTGTGAAGAGAAGGACTACGTGGAGTGGGTCGCCCATTCCactactgaacaaaacaagggCAATGAAGGATGTGTGCTCGGATACAAGGAGAAATTCAGGAGGCTCAGGAAGCTCGATTATGGTTACTATCGACATGAAAACAGTTCGGAGTGTGTTAAGCAGGCCGATTTCAAGGATCAGGATCTGGAGCTGTGTTTAAATGGCGAGGAAGAGGTGCTCCAGACCACTGGATATCGAAAAGTGCCTGGTGACAAGTGTGAAGGAGGCTTCACTCCAAAGCGAACAGAGAAGGACATCCATAAGCTGTGTGGGCAGCAGTCTCAGTCTCAAGAGAGAACTGCTGTGACTGCTGTGAGCATCTGCGTGCTGGTACTCGCATTGAGTGTCGGTGTGTTTCTCATTGTCAGGAAATATGTGTGTGGAGGAAGGATGATAGCATACCGTTTTTCTGCTCTACAACTGCAAGACGATGATCTGTGCATAGCTGGAGAATCTGAGCAGAGTGCCGTCATTAATGAAGGAGGCTTCCACGATGACTCTGATGAGgaTCTCATTGCATGACCCTGCTGTACCCTGGAGTGCAATGTCCAGAAAAGTTTCCAGCCACACTGAACTCAATGACTCAAATATGTTTTCTGACAGGATTGACCCATTGGCCTGTGAATTCTATTTCCAAAGATCAACTCTagcttttccttctttttcttgttgtgtgttattattgcaagctgaaaatattatttaatttatgcttGTTCTTCCCTATCTTCAGAGCACTACTTGACCTATGACCATGGGCTTTTATGAGATTTGTAAATATGCTCTATACACTAGTGGATATGGCCATAATATTTATTGAACATTGAAGAGTTAATGGTTAGAAAGaacatgtatttcattaatttattcctCAGGGGAAAGAGAGTTctctaaaaaatacaaaatcttctATAGAATTATTTTGCGATTGATTCAAATGTTTGCACCGGTTTTGAAAAACTTACTTAATATTGTGCAGGTTTACATTCAATTTTGGTGTATGATGCTTTCATAGAAGTATACGCAGAGGAGAGCaatgaatataatgtaaaaaaggTTCAGAATTGTCACTGAAGGGGAAGATGGTAAGAACTTAACTATGtaacactgctgttgtaattcAGGCTGACTCTTTTAAATTTGTCACTTAAAGCACCACGTGGCACAGGCAAAACTCATGTTGACGCAGCCAAGTTTAATAGATTAAGTTGGAATATCAGTTACCAAAAGCAGACAAATGCATTCCTACAGAAAAAATATCTCCCAGTGAATAGTTTTCTGTGGTGGCAATACAAGTATTGTGTGTGAATGTTGATCTCACGTACAAAGGAGATCGGTTTTGTTATaagatgtatttgttaaaaaaggGTTCATACTGATAAGGGaaatatgatgaaaatgtattgtgtaatatAATGGCACAGTAATGTAGGCCAAAACTTTGGAAGTACGCATTACTTTCTTCCAGAGGCTGGAATAACTCACAACTGTGACCCACCCTCTAATAGAAAACTAGACACCTGTACTCAGCATcgacttcatttattttttcatcagaTCCTTCTTTCTTCCACTCATAATTTTAAAGCTATAAAGTTCAGGTTTATGGTGGCTATAAACGGTGAgtcaaagtttgatttaatccggtcCTAATATGACTTTAACCCTCCCCCCACCaattaaaaacaccaaaacTTTCTCAGCACTTTGCATCCAACACGCATATGAACACTGCTTAAAACAAAGTGGCCGGCTTTCTGTAACACATTTAGAATTTACATGTGGTAGCTGGGTCAAAACTCTGATTCAATTAAACTCTATTTAATCTCTGAAAACCTAATTACAGTGACAAAAGATCACAATAACTCttttcaaacaaacatatacTCACTCTTTAATGCTGTATGAAGGTATACACTgttacaaatgtttgtttttgtattgttttctctgtCAAACTTTAATCGGAACTAATTTACTTATGggttcatgattttttttttaaagatgtttagaatgttaaaataaatccttaatAAAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51335 lncRNA downstream 98468 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 253972 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 439659 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 458724 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 588162 14587845 ~ 14588126 (-) True G41047
TU51378 lncRNA upstream 23288 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 24958 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 354177 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 426547 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 507223 15719555 ~ 15722457 (-) True AMCG00012985
AMCG00012959 mRNA downstream 2040 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012956 mRNA downstream 96913 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012955 mRNA downstream 110675 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012948 mRNA downstream 379450 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012943 mRNA downstream 403681 14757801 ~ 14772607 (-) True AMCG00012943
AMCG00012964 mRNA upstream 7001 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012971 mRNA upstream 54882 15267214 ~ 15304371 (-) True AMCG00012971
AMCG00012970 mRNA upstream 104761 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012965 mRNA upstream 128825 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012968 mRNA upstream 142759 15355091 ~ 15373666 (-) True AMCG00012968
TU50830 other downstream 2060801 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2922845 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6063212 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8720110 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 12992125 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2667893 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2741731 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2963729 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3030418 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3764728 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile