RNA id: AMCG00012961


Basic Information

Item Value
RNA id AMCG00012961
length 1669
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00012961
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15297962 ~ 15317344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTTCTGCCCCCTCAGCCTCCTGATGTCAAGATGTTTTCAGACACCGTGGCCTCCAGTTTCTCCTCTGCCATCGTGGGGTACGCAGTGGCTGTCTCTGTGGGGAAAGTGTACGCTAATAAATTTGACTACACAATAGACGGAAATCAGGGGCATTCTCCGGCTTCCTTGCCACCACGATTGGCCTTTGCCTTGCTGGTCGCCATCCCACCTAAATATGGTCTTTACGCTGcatttttccccattttgtCCTATTTTATTATGGGAAcctcaaaacatatttctgtaGGCCCCTTTCCAGTGACCTCTTTGATGGTGGGGTCAGTGGTCTTGACAATGGCTCCAGATCAGAACTTTATGGTAGCTTCTAATGGCACCAATGGAACTGTTATTGACACAGCGGCCAGAGATGCATACCGGGTTATGGTGGCTGGCACTATGACCTTCCTGATTGGTTTATTTCagCTGGGCATGGGAGTACTCCAGATTGGGTTTCTGGTACGATACCTCTCTGACCCCTTGGTGGGGGGCTTCACCACCGCAGCTGCGTTCCAAGTCTTTGTCTCTCAAGTAAAACTAGTTCTTTCAGTGCCAACATTTAACTACGATGGAGTTCTTTCAATCATATATacagtcattgacaTTTTCAAGAATATTCATCTCACCAACATTGCGGATCTGGTTGCGGGTTTGCTGACAATTTTAGTTGTAATTACAGTAAAAGAACTCAACACTAAATACCAGCATAAAATTCCAGTGTCAATTCCCATTGAAGTCATAGTGACGTCCAGAATCAGCCCGTCCTGCTCTGCCCTTGCCAACGTCCCAGGCACAGACCTCTATAAGAACATTAAGGACTACAAGAATCTTAGAGAAGAACCGGGAATAAAAATCTTCAAATGCAATTCTTCCATCTACTTCGCCAATATCGATTTCTTTAGAGACCGCTTGAAGGCAATCGTGGGGGTGGATGCAGTGAGAGTTCATAAGAAGAGGACCAAGGCCCTGAAGCAGATACAGAGACTCATTAAGAAGGGAAGGTTAAGAGTGACTAAGAAAGACAAAGTCCCTGAGGAAGTGGAGGACAATGAAATCCCCAGCACACAGGTGGACATACAGGTGGACTGGAATTCTGATCTGCTGGTGAACGTGGCTGTGCCAAAAGTCCATATCCACAGTCTCATCTTGGATTTTTCAGCTGCGTCCTTTCTTGATGTCGTGTCTAGAGTCTGTACAAATGATGATGATGAAATTGCCCACAAACTGGAATTGTGTGACTTTTTTGACGACATGGTGAAGAGGGACATTCTGTTCCTGACTGTGCACGACGCAGTCCTCTTCATTAAGCTGCAGATCATCAACGGCACCATTCAGGATCCCATATATGACATGATTGCTGGTATTCTTTCAGCCTTAATAGTTTTGATTGTCATAGTTGCCCTGGGACCCTTCCTGGAACCTCTACAAAAGTCGGTTCTGGCAGCCATCGTCATCGCCAACCTCAAAGGAATGTTCATGCAGGTTCTGGATGTTCCTCTCCTCTGGAAGCAGAACAAAACCGACTCTGTAATTTGGGTCTTTACCTGCATTGGATCCATAATCCTGGGACTCGACATTGGGCTCCTGGCAGGTGTGGTGTTTGAAATGGCCACAGTGGTGGTTAGAACCCAG

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51390 lncRNA upstream 10146 15285341 ~ 15287816 (+) True G41230
TU51381 lncRNA upstream 12674 15237287 ~ 15285288 (+) False G41225
TU51379 lncRNA upstream 12674 15260868 ~ 15285288 (+) True G41225
TU51380 lncRNA upstream 13994 15237287 ~ 15283968 (+) False G41225
TU51384 lncRNA upstream 33389 15248378 ~ 15264573 (+) True G41226
TU51438 lncRNA downstream 159835 15477179 ~ 15818342 (+) False G41264
TU51439 lncRNA downstream 163347 15480691 ~ 15483321 (+) True G41265
TU51457 lncRNA downstream 238802 15556146 ~ 15559305 (+) True G41282
TU51458 lncRNA downstream 249161 15566505 ~ 15569834 (+) False AMCG00012973
TU51460 lncRNA downstream 253562 15570906 ~ 15573468 (+) True AMCG00012978
AMCG00012960 mRNA upstream 18715 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012962 mRNA upstream 37037 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012957 mRNA upstream 73449 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012953 mRNA upstream 146139 15145480 ~ 15151823 (+) True AMCG00012953
AMCG00012954 mRNA upstream 162785 15081419 ~ 15135177 (+) True AMCG00012954
AMCG00012963 mRNA downstream 103499 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012972 mRNA downstream 208690 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012974 mRNA downstream 228291 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012973 mRNA downstream 249149 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012978 mRNA downstream 254412 15571756 ~ 15572208 (+) False AMCG00012978
TU51320 other upstream 161233 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 664549 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 768156 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 864761 14428313 ~ 14433201 (+) True G40999
TU50637 other upstream 2807540 12489799 ~ 12490422 (+) False AMCG00012894
TU51437 other downstream 159835 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 303441 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3708217 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5952331 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 6053499 21370843 ~ 21418787 (+) True AMCG00013126

Expression Profile