RNA id: AMCG00012963


Basic Information

Item Value
RNA id AMCG00012963
length 1974
RNA type mRNA
GC content 0.54
exon number 17
gene id AMCG00012963
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15420843 ~ 15475870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTACTGTGTCATTTTTGATTACCTGTCACAAGGAGTCGATCTGTCGGGGATAGATGTGATCGAGACGGACCTGCTTTTCATTGCCCGCTCTCGACTGGAGGTAGAGAACCAGGCCAAGCGCCTCCTGGAGCAGGGAATGGAGATTCAGaaccCTACTCAGGTGGGGACAGCGCTGCAGGTCTTCTACAACCTTGGgagtttaaaacaaaccataaacaatGTGGTTGATGGTTACCGAGTGTCACTGGAAGAGAACGTGTCCAACGCACTGGACATCAGAGTCTTGACTCAAGCAAATCAGGGAATCGCAAGAGGGGGTCCTGGGAGAGCTGTGATGCCAACACCAGGGAACACAGCCGCTTTCAGAGCAGCTCTGTGGACCAACCTGGAGAAGCTGATGGACCACATCTGTGCATCCTGTGGACAAGTGCAGCATCTGCAGAAGGTACTTATTAAGAAAAGAGACCCAGTGACCCACGTGTGCTTCATTGATGAGATTGTTAAGGATGGCCATGCAGACATCTTGTTTACATTCTGGAATTCTGTCACACAGATTCTCGCCATCGAATTCCAAAAGGCAACAAACTCTTCCTCATTCCTGAAGCAAGCTCTGGAGGGAGAATACCCCAAACTGCTGAGACTCTACAATGAGCTGTGGAGGCGACTGCAGCAGTACAGCCAGAGCATTCAGGGCAGTCTGGCTGGCAGCACGGGCTTGGAGCTTGTGGCCGAACTTCCCCCTGGAGAGCTGGACACACAGGACCTCTTCATGCACAAGAAACAGGATTATGAtCCAGAGAAGGCGTTGAAGGACTCCCTGCAGCCCTATGAAGCGGCCTATCTGTCCAAGTCTCTGTCCCGCCTCTTTGATCCCATCAATCTGGTCTTCCCCATGGGGGGGCGCAACCCTCCCTCTAGCGATGAACTGGAGAGCATCATTAAAACCATCGCAAGTGAGCTGAATGTGGCTGCGGTCGACTCAAACCTGACTTTGGCCGTGGCGAAAAATGCGGCGAAGACCCTCCAGTTGTTTTGTGTCAAATCGGAGCAACTTCTGTCCACACAGGGGGATGCCAGTCAGGTTATCGGGCCTCTTACCGACGGGCAGAGAAGAAACGTGGCCGTCGTCAACTCCTTGCATAAGCTGCACCAGTCAGTGGGGAAGgtgATCTCTGGTCTGAGCTTCTGTCCGGTGGTTGCTGAACAGGCCCTGATTGCTGCCTTAGAGGAGGTGCAGTCTCTCATGGGCAGTGCTGTGCAGCCACTGCTCCACTCCGTCAGCGACTCAGTGGAGGCCATTATCATCACCATGCACCAGGAGGACTTTTCTGGGCCTCTGTCCAATACAGGGAAGCCGGATGTGCCGTGTTCCCTGTACATGAAGGAGCTACAGGGCTTCATATCACGAGTCATGAGCGACTACTTCCGACACTTTGAGTGTATCGACTTCATCTACGACAATACTGAGGCCATAGCACAGCGAGCCATCGAGATTCTCATTCGCAACGCTGGGCTGCTGCGGCCGCTGGGAGAAGGGGGGAAGATGAGGCTGGCGGCTGATTTCGCTCAGATGGAGCTCGCCGTCGCCCCCTTGTGCAGAAGAGTGTCAGACCTGGGCAAGCCATACCGCCTGCTGCGCTCCTTCCGGCCTTTGCTTTTCCAGACCAGTGAGCATATTGCCAACAGCCAGGCGGTGGGGGATGTCATTCCGTACAGCACCATCCTGCACTTCCTGTTCACGCGAGCGCCGCCTGAGATGAGGTCCCCACACCAGaGAGCAGAATGGTCCATTGCACGATATTCCCAGTGGCTCGATGACCATCCATCAGAAAAGGACCGCTTGACTCTCATAAGAGGTGCACTGGAGGCCTATGTGCAGTCTGTCCGTGCCAGAGAGGGGAAGGAGTTTGCACCCATATATCCAATAATGTTACAGCTGCTCCAGAAAGCCACGACGGTGCAACAGTGA

Function

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20292 COG5; conserved oligomeric Golgi complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51392 lncRNA upstream 119282 15301188 ~ 15301561 (+) False AMCG00012961
TU51390 lncRNA upstream 133027 15285341 ~ 15287816 (+) True G41230
TU51381 lncRNA upstream 135555 15237287 ~ 15285288 (+) False G41225
TU51379 lncRNA upstream 135555 15260868 ~ 15285288 (+) True G41225
TU51380 lncRNA upstream 136875 15237287 ~ 15283968 (+) False G41225
TU51438 lncRNA downstream 1309 15477179 ~ 15818342 (+) False G41264
TU51439 lncRNA downstream 4821 15480691 ~ 15483321 (+) True G41265
TU51457 lncRNA downstream 80276 15556146 ~ 15559305 (+) True G41282
TU51458 lncRNA downstream 90635 15566505 ~ 15569834 (+) False AMCG00012973
TU51460 lncRNA downstream 95036 15570906 ~ 15573468 (+) True AMCG00012978
AMCG00012961 mRNA upstream 103499 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012960 mRNA upstream 141596 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012962 mRNA upstream 159918 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012957 mRNA upstream 196330 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012953 mRNA upstream 269020 15145480 ~ 15151823 (+) True AMCG00012953
AMCG00012972 mRNA downstream 50164 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012974 mRNA downstream 69765 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012973 mRNA downstream 90623 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012978 mRNA downstream 95886 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012980 mRNA downstream 140387 15616257 ~ 15618444 (+) True AMCG00012980
TU51320 other upstream 284114 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 787430 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 891037 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 987642 14428313 ~ 14433201 (+) True G40999
TU50637 other upstream 2930421 12489799 ~ 12490422 (+) False AMCG00012894
TU51437 other downstream 1309 15477179 ~ 15479366 (+) True G41264
TU51470 other downstream 144915 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3549691 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5793805 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5894973 21370843 ~ 21418787 (+) True AMCG00013126

Expression Profile