RNA id: AMCG00012964


Basic Information

Item Value
RNA id AMCG00012964
length 3644
RNA type mRNA
GC content 0.42
exon number 20
gene id AMCG00012964
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15219333 ~ 15233107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGAGGAATCCCCCCAGCCAGTACATTGTGGCCCGGCCACTGTATTCAGAGGACTCCTTCAAGGAAGACAATGAGAGAGTGCAAAGACGACACAAATCCTTACTGAATCACGTGAAGGActgTTCTTCAAAAAGAGCAAAAAATGCAGGTTTGTCCCTGTTGCCTATCATTGGCTGGATCAGGATTTATCGCATCAAGGAGTGGCTTTTGAGTGACATAGTGTCCGGCCTGAGCACTGGACTTGTGGCTGTTCTGCAAGGTCTGGCTTTTGCGTTGCTGGCTTCTGTTCCTGCTGGTTATGGGCTGTATACAGCTTTCTTCCCAGTTTTGACTTACTTCTTCTTGGGCACTTCAAGGCATATATCAGTAGGCCCCTTCCCAGTGCTGAGTTTAATGGTGGGCTCAGTCGTCATGAGGATAGTGCCAGAAAATGGGACCCAAGCCAACATCACCGCCTTCGAGGGACTGTCTCTTCAAGATAAGCAAGTGATGGTGGCAGCCTCTGTGACTTTTCTAGTAGGAATCTTTCAGCTGGCACTGGGTCTGCTCCAGATTGGGTTTATTGTCATCTACATGTCTGACACCCTGGTGTCCGGATTCACCACGGCAGCCGCTGTTCACATTCTGGTTTCCCAGTTGAAATTCATATTAGGATTAACTGTTCGTGGGGAAAATGGAGCCTTTGCTATCATTAGAACCTTGGAGAGCATATTCTCTCAGATCACCAAGACAAACATCCCAGACCTGGTTACCTCCATAATCATCATGGTTGTTGTCTTCATTGTGAAGGAGCTTAATGACAGATTCAAAGCCAAGTTGCCAGTCCCCATCCCCATTGAAGTGATCATGactGTCATAGCTTGTGGGGTGTCCTACGCATTTGACTTCCAGACCCTATATGGGGTTAGTGTTGTTGGCAAGCTAAAAGAAGGGTATGAGTCCCCAATGGCCCCAAATTTAGAAATCTTACAGCTCAGTGTCATGGATGCCTTTTCCATGGCAATTGTGGCATTTGCAATTGCCTTTTCTGTTGCAAAAGTTTACTCTGTTAAACATGATTATCTTATCGATGGCAACCAGGAATTAATCGCTTTTGGTGTCAGTAATATATTCGGTGCAAGTTTCAGAAGTTTTGCAGCTTGTACATCTCTTTCAAGGAGTGCTGTGCAGGAAAGCACCGGCGGCAAAACTCAGattgCTGGTCTCCTCTCTGCTATGGTGGCAATGATTGTCACAGTGGGAATTGGCTTCCTTCTAGAGCCACTTCAGACGTCTGTGCTGGGAGCGTTGGTGGTTGTCAACTTGAAGGGGATGCTGATGCAAGTCAGAGAGATCCCTTATCTTTGGAAAAAGGACAAGCCTGACTGTATTGTCTGGGTGGTTACTTTTGTTGCTTCCATCTTCCTTGGGCTCGACCTTGGACTGGCTGTTGGGCTGGGAATTGAACTTCTTACTGTTGTCTTCAGGACACAGTTCCCACGCTGTTCCGTACTGGCCAACATCAAGGGAACAGATATCTACAGGGACAGGAAAGATTACCTGAGTATTTATGAACCAGACGGCGTGAAGATCTTCAGAATCCCTTCACCGATCTTCTTTGCCAACATCGAGTTCTTTAGGGACAAACTCAATGCTGCGGTGGGATTTAATCCACTCCGGATCTTGCGCAAGAGGAACAAGGCCctgaggaaaataaagaaacttttGAAGAATGGAGAGCTGCAGATAACACCAAAAGGTCTGCTATACACTGGATCAGCTCCCATTGAAGAGTCTGAAGACGAAAGCAACATGGAAGATCTGGACCAGCCCACAGACTTTGCCGGCCTGCCTGTTCAGATCAACTGGAACACTGATCTCCCCGGCAACATCACAGTCCCCAGGATTGACATACACAGCATCATCCTCGACTTCGCAGCAGTTTCGTTCCTTGACATGTCTGGAATTAATGGccttaaaatgACATTGAAGGAATTTACACGAGTTGAGGTGGATGTCTACATTGTAGCATGCGACTGTTATATTTTGGACAAACTACATGAATGTGGATTTTTTGACAATGAGATCAAGACCTCAATCTTCTTCTTGACCCTCCATGACGCCATGCTGTGCATCCTGGAGAAACATCCGGACCACACAGAGGATCTGAAGGCATCGAAGaataaTTATCACAGCTTCAAAGTCAGTCAGGGCAGTGGCAgcttgagaaagagagagagtgaaGTTCCAGACCCTGAGACGAAATTTTAAAATTCTGACAGAGATCCCAGCactagaaaataaacatttggacaATCCTTCCTGTTCTCCTATCAATGAAAAGGCAGTATGAGTTCTAGGGACACTACAGTTTGAACAGCTTATTGATGTGAGTGCTACTTCGCATTACTCAGTTTCACCTTTCTTCAAAAAAGGAGACCATTAGGGAAGCTGAGCTTGATTTTGAGTGCTGACTAATTATATTATTGAGACTTCATACCTTTACAAACaattggcaaaaacaaaaacttattACAACTTATTCTTGGCAAAAgttttacataatataaactGGAAATTGCAAGGTAGAGCAAACCTGATTTGAACTAGATAAACTAGGGTCAGAGAAAAAAAGCTTCAGGTCACACCTCAAATATTCTTCAACCAAGATGagatgtatttcattttcattgtcctattaaatagcattttgtctgaaaatgttttgtaaatagggaagatttattttaaatactcttttttttaaagtgcatgaTTCAATTTTATCTGTGTATcacaaggtttaaaaaaataataattgtacatttcaaattatagtGCTGAAGATTAATGTATAATGCTGTTATGGTAAAGATGATAAGAAGCCACATACAGCTGATATCCACTGTCACTGGCATGATCTTGCTGAGATCTTTCAAAGAGGACGGCCCCATTTgtcaattgtattttatgtgagCACCAGACTTCAGGGCAGGGAACAGAAGCAGGTATACCGCAATGCAGACTGGAACCTGGCAgcagtattgtgtttttaaatggcagGGGGTTGTACAGTGTTCTGGTGTGGTTTCTATCGGGTGCCAGACAGTCCACAGTGAAACACCCACTCAGATCAGCTCTCCAGAACCTCTCCAGGTCAGGGTTCAGCAAAATCTGAACGGATGTAGCTAAGTATAGTGTAatgattaatatgtattaagcATTAAATTAAGCATTACATTAAATGAGTCCCAGAATTACTGTTTCAAGtgaagggtttgaatacttccAGCTGCAGCAGGCTTTGTCATGATGGCATAGTCCAACAATAAACACAAGTACATGTgcagagaaatacaaaacaatctcacacacactgcatttcCATTCTGAGATTTCCTTacaacataacataacacaacCCGGTTAACATCATATATTGGTACTTTGCTATTGCAAGTAATTCTGTCGTTTGATTTTACAGTTAGAATTTTGTATAGCATATTCCAATGTATATACTGTTCTGAGTAGAAGTACTTAGTCGTACAATAAAGCAATAGCAATTCAAACTAAAGGTCTATTTTGATTATTTGGGAGGAAGATCAGACTATAATCAGTGAGAATGATGTGGTGTGACCCAAGACTTTGCAAAGCAATGTCAC

Function

GO: NA

KEGG:

id description
K14078 SLC26A3, DRA; solute carrier family 26 (chloride anion exchanger), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51335 lncRNA downstream 141513 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 297017 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 482704 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 501769 14717234 ~ 14717564 (-) True G41088
TU51152 lncRNA downstream 631207 14587845 ~ 14588126 (-) True G41047
TU51378 lncRNA upstream 2513 15235620 ~ 15235862 (-) True G41224
TU51406 lncRNA upstream 4183 15237290 ~ 15278312 (-) True G41243
TU51558 lncRNA upstream 333402 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 405772 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 486448 15719555 ~ 15722457 (-) True AMCG00012985
AMCG00012958 mRNA downstream 7001 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012959 mRNA downstream 45085 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012956 mRNA downstream 139958 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012955 mRNA downstream 153720 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012948 mRNA downstream 422495 14795042 ~ 14796838 (-) True AMCG00012948
AMCG00012971 mRNA upstream 34107 15267214 ~ 15304371 (-) True AMCG00012971
AMCG00012970 mRNA upstream 83986 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012965 mRNA upstream 108050 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012968 mRNA upstream 121984 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012966 mRNA upstream 143369 15376476 ~ 15378948 (-) True AMCG00012966
TU50830 other downstream 2103846 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 2965890 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6106257 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8763155 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13035170 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2647118 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2720956 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2942954 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 3009643 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3743953 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile