RNA id: AMCG00012965


Basic Information

Item Value
RNA id AMCG00012965
length 2312
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00012965
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15341157 ~ 15354156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATAACGTGTACAGGGGGAGGGATGACATTTGAAACACTTGAATCTCGTGCCAGTAGGTTCTTTTTTACTTGTATAACAACATCAATGTCTTTTCAGAAACACATATAAATACCAAACAGGAAGTAACTGTACCACAGTCTGAATTACTCCCTGCAGGAAGGATAGCATCAGTACAAGtgatgGATCTTCCCCATCCTGAGTACAATTACTTTGTTGCTCGACAAATTTACAACAAACCTGCTTTCGATGATGAACACGAAAGAAAAGCACGAGTTCCAAAGACGTTGCGGGAGAAATTAGTCCCAAAATGCGAttTTTCCAAGAAAAGGGCCTTTCAGATCACAAAGGGTTTCCTTCCCATTTTGGACTGGCTGCCTCAGTACAGAATAAAGGAATGGCTGCTCAGTGACATCATCTCTGGAGTCAGCACTGGACTGGTGTGTACTTTGCAGGGATTGGCCTTTGCTTTGCTGGTCGCTGTCCCACCCAAATATGGTCTTTACGCTGcatttttccccattttgtCCTATTTTATTATGGGAAcctcaaaacatatttctgtaGGCCCCTTTCCAGTGACCTCTTTGATGGTGGGGTCAGTGGTCTTGACAATGGCTCCAGATCAGAACTTTATGATAGCTTCTAATGGCACAAGTATCAATGGAACCGTTATTGACACAGCTGCCAGAGATGCATACCGGGTTATGGTGGCTGGCACTATGACCTTCCTGATTGGATTCTTtcagctGGGCATGGGAGTACTCCAGATTGGGTTTCTGGTACGATACCTCTCTGACCCCTTGGTGGGGGGCTTCACCACCGCAGCTGCGTTCCAAGTCTTTGTCTCTCAAGTAAAACTAATTCTTGCAGTGCCAACACTTAACTACAATGGAGTTCTTTCAATCATATATACAATcattgacattttcaaaaatattcatCTCACGAATTTTGCGGATCTGGTTGCGGGTTTACTGACCATTTTAGTTATAATGACAGTAAAAGAACTCAACACTAAATACCAGCATAAAATTCCAGCTATAATTGCAACAGCCATCTCTTATGGTGTTAACTTGCAGGCAAAgtacaatgcacacattgtcAAGAGCATCCCAAGGGGATTTCTTCCCCCTCAGCCTCCTGATGTCAAGATATTTTCAGAGATTGCGGCCTCCAGTTTCTCCTCTGCCATCGTGGGGTACGCAGTGGCTGTCTCTGTGGGGAAAGTGTACGCTAATAAATTTGACTACACAGTAGACGGAAATCAGATTGCTGGTATTCTTTCAGCCTTAATAGTTTTGATCGTCATAGTTGCCCTGGGACCCTTACTGCAACCTCTACAAACGTCGGTTCTGGCAGGCATCGTCGTCGCCAACCTCAAAGGAATGTTCATGCAGGTTCTGGATGTTCCTCTCCTCTGGAAGCAGAACAAAACCGACTCTATAATTTGGGTCTTTACCTGCATTGGATCCATAATCCTGGGACTTGACGTTGGGCTACTGGCAGGTGTGGTGTTTGAAATGGCCACAGTGGTGGTTAGAACCCAGTTCCCCTCCTGCTCCGCCCTTGCCAACGTCCCAGGCACAGACCTCTATAAGAACATTAAGGACTACAAGAATATTTCAGAAGAACCGGGAATAAAAATCTTCAAATGCAATTCTCCCATCTACTTCGCCAATATCGATTTCTTTAGAGACCGCTTGAAGGCAATCGTTGGGGTGGATGCAGTGAGAGTTAATAAGAAGAGGACCAAGGCCCTGAAGCAGATACAGAGACTCATTAAGAAGGGAAGGTTAAGAGCGACTAAGAATGGCGTGGTGTCAACTACGGGCATTGACAACGAGGCCTTTGAGAAGGACCCAGAAGAAGTGGAGGACAATGAAATCCCCAGCACACAGGTGGACATACAGGTGGACTGGAATGCCGATCTGCCGGTGAAAGTGGCTGTGCCAAAAGTCCATATCCACAGCCTCATCTTGGATTTTTCAGCTGCGTCCTTTCTTGATGTCATGTCTGTAATTAAAGAGTTCATGAGAATAAGTGTGAACGTCTACATCGCTGGATATGATGATGAAATTTACCAGAAACTGGAATTGTGTGACTTTTTTGACGACATGGTGAAGAGGGACATTCTGTTCCTGACTGTGCACGATGCCGTCCTCTTCATTAAGCTGCAGAGCATCAACGGCACCATTCAGGATCCCATATATGACAAGATCGCATTGATGCAGAATTCCAAAGATCCCATACTCTtaactgatgatgatgatgaagaagtAGAGACCTATGACAATCAGCACAGGGTGATT

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0006821 chloride transport biological_process

KEGG:

id description
K14702 SLC26A4, PDS; solute carrier family 26 (sodium-independent chloride/iodide transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51406 lncRNA downstream 62845 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 105295 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 263337 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 418841 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 604528 14733735 ~ 14736629 (-) True G41102
TU51558 lncRNA upstream 212353 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 284723 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 365399 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 436136 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 601279 15955435 ~ 15956038 (-) True G41442
AMCG00012970 mRNA downstream 16434 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012971 mRNA downstream 36786 15267214 ~ 15304371 (-) True AMCG00012971
AMCG00012964 mRNA downstream 108050 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012958 mRNA downstream 128825 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012959 mRNA downstream 166909 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012968 mRNA upstream 935 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012966 mRNA upstream 22320 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012967 mRNA upstream 51609 15405765 ~ 15412645 (-) True AMCG00012967
AMCG00012969 mRNA upstream 123730 15477886 ~ 15485986 (-) True AMCG00012969
AMCG00012977 mRNA upstream 138205 15492361 ~ 15509522 (-) True AMCG00012977
TU50830 other downstream 2225670 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3087714 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6228081 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8884979 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13156994 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2526069 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2599907 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2821905 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2888594 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3622904 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile