RNA id: AMCG00012968


Basic Information

Item Value
RNA id AMCG00012968
length 2489
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00012968
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15355091 ~ 15373666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATAAAAGTTCCCGCAGTTCACAGCGCAGTGAGAAGAGCGTTACGTGGTGCGGACGTGCCGCGGTTAGCtctcttgttgcgcagattcccgcagttctgcacaaTTCCTcccatcccattggtggagcagcgcagagcCGCGCAAAACTGCGCTACACAGACCCGTGTCTGTGTTGTTAATGTGAAACGATGATactTGAACTGTGAAGATGAGTCTCCAGTGGACTGCAGTGGCAACTTTCCTCTACTTTGAAATTTGCATTCTCCTTATATTCTGCATACCATGGATCTCGCCAAAGAGatGGCAGAAGATTTTCCAGTTCAGTATATGGAATAAAGTTGCCCCTTACTGGAACAAAGGCTTTCTTACTATGATTGTAGCCCTAATCGTCCTGTTTCTTGATGCTGTGCGAGAGGTGAGGAAGTACTCGAGCTCAGAAGTCGGCAAAGAGTCCAAACTCTACCCCAACATGTTGGACCACCTTCACATGAAGCTTTTCCGGTCACAGAGGAACCTCTACATCTCAGGCTTCTCCCTCTTCCTGTGGCTtgtcCTTAGACGCGTCATCACCCTGATTAATGATCTGGCATCTGCGACTGGGACGGGGGAAATGTTAAAGAATCAGGCAGGTGGTGCTATCCAGGCATCAAGGAAGTACATGGAAGATAATGAGTGCATGAGAcagGCTTTGGAAGACGGGAAACGGGGTAAGAGAGATAATCAGCCGGAGAGCGAAAATGAGAAGCTGGTGAAAGAGGTTGCCAGGCTGAAGGAGGAGCTGAACAAAACATCAGATGctcTGACGAAGTCGGGGATTGAAGTGGACGACGTGAAAAAACAGACCGACACCCTGACCCAAGAATATGATCGGCTGCAAAGGGAGCATGAGCAGCTGCAGaAATGTCACGGTGATGTCGAGGACAAGAAGTATCAGTAGAGCCTGACGGTTTCCGTGCTGATCTTCAGGCTTGTTAACTAGGCTGAAACAGAGCTGCTGTGCCATGGTGCCCAGTGGTCTGTattgtggaaatgtattttaaagctttgCATGTTCCCCTCACTATTCCTCCCTAAAACTGCATGACGCGCTGAAGAAATGCAGAGCTGATAAGAATAGTTATTACAAATAGTCATTGCACAATTCAGGGCTTGATAGCTTTGACATCAGTCCACAATGGCCCCTTTCAGTCACCACtcacaattttgttttctgttatgtaTATTTATCCGTGGGTGTAGATGTAGTATTTGTAGAGATGCATGCATCACGTTCAAAGATTTTACAAGTGTGTTGAGCGCAACTGTGAACTACgtacatttgtttctgttactTCTAGGTTTTAGTGGGTTTGTTAAAAAATTagaaaacacagcaacagaTGATGTCAATTAAAGGCCAGTTTTACAATTTGCTCAAGTGCTTAGGGCAGTTAATCAcatctgtgtatgtttttattttaattctgtttctgGATACTGGTATAAAAGAAGATTTGTGGGAACTATTTTGCAATAACTGCAAAAAGCAGAAGTGCCTTCATGTAAAATTTTAATTCCACCACTTtctctgaatgttttttgtatgaTGTATAGAAGAGTGATTTTAGAACTTAAATTTTCCAACCAGTTCTCGCATAAAATGGCTTTATGTGCATttgaactgtttaaaatatattgcaataaagTCACAATGTTACATTCTCCAGGTGTATGTAGTCAGAACCTACATGACGCAATAAACTGAAAGaaagtttgtatgtttgtatccTGCAGCGCAGTGACTTGAGCAATGGCTGCTCCAGTGATATAGGCTCGGATCCATCACATTCAAACCTGACTATAAACATGGACGCCCATTCACATACGCACGTGTTCCAATATTTTTCACAGAAAGCAGGTTTCCAACAAGTAATTCTATTTGCAAATATTATGTAAACACTTCTTAGAAAACCCAATTCGAGAATATTCCTGATAGTGAGTTTTGATGAAAACACGATCtctaaaattattattgcattgtgaataccagtgtatgtatttatgtaaacatttttcagattctttttttttcttcctgcaaatgtgcattttttttaccttaatCCCTCTTTAGCTGATTCCTGCTTAACTGCTCTACATTTTCTGAATAAGAAATATGGCTGTTGATAGTGGTGTTCCAGCAGAACTTTAGTCAGATTTTCATGTGAACAGTGTTCTGTTCGGAGAAATAACATTTCTGATtgtgtttacaaaatattacaacGAACAGTAACTatttggaaatgtgtttatctATTATTGTTATCTGTATTCTGTTTCATGTGTCCACTTTGTTCTTGCACTGAGGCGTGCTAAGCACAGTCAAGTTTCCATTGATGTTCTATGTAATGAACAATAAAGCTTTTTGATGTGAGACTTCATATTTTTTGCATATGACTGATGACAGTGtgacacaaaatgttttttaaatatgttttaaaagagaaat

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51406 lncRNA downstream 76779 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 119229 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 277271 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 432775 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 618462 14733735 ~ 14736629 (-) True G41102
TU51558 lncRNA upstream 192843 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 265213 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 345889 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 416626 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 581769 15955435 ~ 15956038 (-) True G41442
AMCG00012965 mRNA downstream 935 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012970 mRNA downstream 30368 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012971 mRNA downstream 50720 15267214 ~ 15304371 (-) True AMCG00012971
AMCG00012964 mRNA downstream 121984 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012958 mRNA downstream 142759 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012966 mRNA upstream 2810 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012967 mRNA upstream 32099 15405765 ~ 15412645 (-) True AMCG00012967
AMCG00012969 mRNA upstream 104220 15477886 ~ 15485986 (-) True AMCG00012969
AMCG00012977 mRNA upstream 118695 15492361 ~ 15509522 (-) True AMCG00012977
AMCG00012975 mRNA upstream 138806 15512472 ~ 15522929 (-) True AMCG00012975
TU50830 other downstream 2239604 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3101648 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6242015 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8898913 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13170928 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2506559 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2580397 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2802395 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2869084 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3603394 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile