RNA id: AMCG00012969


Basic Information

Item Value
RNA id AMCG00012969
length 2137
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00012969
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15477886 ~ 15485986 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGAGGGGGTCGCCGGGGGGTGACAGCGCGGCGGGAGGCAGCGCTCATTGTGACGGTCGttgtttttgagttttgttttggttccaCTGCGAAGTTGTCTGTCCGTCTGTGACGTTTTCGCTTCATTCATTTCACCATCTTTGACAGCTCGACGGTCGCCCTGTCCAAACTTGTTGACATTCTTCATGAGCAACTTCGACACTGTTTTCCTCTGTCGtgccttttattttgttgtttggcagaaatcttttgttttgctaacGTTATTTAAGAGGAAAGCCTTCCCGAGAGATTGTTCCGcgtactttttgttttgttagaccgttcatttttacttttgtttttcacgtttttttttgttttttgttttgctcagtgtaaattattaacatgtttttattttaaagcgaATAAGTCAGGCAAGGTGACATGGCATAATATGGTGTGGGAAGTGAAGACTCAGTTGATGCCCAACAGTGTGGAGAAAGAGCCTCCGTTGCTGATGAACGAAAGAGCTTCAGGAATGGACGACACGTTTGAAATGCTCAAGTGTAACGAACACTTGCCGTCTTCACCTGGATACCCTTCCAGTGAGAATTGCATGGAGTATGATGACCTCCCTGAGTTGCAGGCCGTGCAGGAGGACGggccccacccccccactgtgTTCCAGCTCAGCTCAGGGGTGTCCCACCAGGAGCGCCCTCGCTCTCTCTGGGGTCCCCCTCCTTCCAGCCCCCCCGTGAGCTCAGCCTCCCCAGACACCAGCACCAACTGGCTGACCGAGCTGGCCAACATTGCCACTAGCCCAGAGAGCCCCCTCATGCAGTGCACATTTTATAATAGATCATCTCCTGTCCATATAATAGCCACCAGTAACAGTTTACATTCCTACGCTCGTCCTCCACTGGCCTCCACGAACGCCAAACCAGGCTCAGCAAAGAATCACTGGAGGGATCGGGCAGCAGTTAAGCATGAACggACAAACAGCGAGTCGGAGTCTGGGATTTTCTGCATGTCTTCGCTCTCCGATGATGATGACCTGGGCTGGTCGCATTCGTGGCCTTCAACGGCATGGCATTGCTTTCTGAAAGGCACCCGCTTGCGCTTTCACAAAGGGAATAACGTGGAGTGGCAGGACGCTGAAGACATTACAGATTCTGACGATGAGTCTGAGGATGAGCGGGAGTCCCTCTGCCATTCCCTGAAGAGCTATGGTTCTGAAGGTCTAAAGTTAGTGGCACATGAAGAAACTGTGTCTTTTGGGCAGTCAGTACTGAAATTGACTTTTGACCCTGGTTCGCCAGAAGATGGCCTTTTAACAGCAGAATGCAGATTGGATCATCCCTTTTATGTGAAAAGTAAAGGTTGGTCTTCCTTTTATCCGAGCCTTACCGTTGTCCAGCATGGGATCCCCTGCTACGAGATGCAGGTTGGAGATCTTTGTCTACCTCCAGGACACCCCGATGCCATAAACTTTGATGATTCAGTTGTTTTTGACACTTTCAGGAGCTATGACTTCACTCCGCTGGACTCCTCGGCCGTGTACGTGCTCAGCAGTATGGCTCGCCAGCGCCGGGCTTCCCAGTCCAGCGGAGGAGCCGTCAGCCCCAGCTTTGAGAAATCAGGCGGAGACTTTGAGCTGTTGGGGTCCTCCCAGCCTTCTGGTAACTTCAGCAGCAAACCACACAAAAGCCACAGCTCAGGGACAGCCAGCAGTGCCACGCCAGCCAAGTGCAAGAGACCAATGAATGCCTTCATGCTTTTTGCAAAGAAGTACAGGGTGGAGTATACACAGATGTACCCAGGAAAGGATAACAGagccataagtgtGATCCTCGGAGATCGGTGGAAGAAGATGAAGAACGAGGAAAGAAGGCTGTACACGATGGAGGCCAAAGCCCTGGCCGAGGAGCAGAAGCGCCTTAATCCCGACTGCTGGAAACGGAAAAGAACCAACTCTGGATCACAGCAGAATTAGGACATGGAAAGCAGCAGGAACCTGACTGGATGGATTTCTGGAGACCTGACTCGCTTCTGTTCCCTCTGTAAGGCTGTTCAGATTACTGTGACAAAAGTTATGCTTTTAAATtgagacaaaatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
K21644 HBP1; HMG box transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51406 lncRNA downstream 199574 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 242024 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 400066 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 555570 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 741257 14733735 ~ 14736629 (-) True G41102
TU51558 lncRNA upstream 80523 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 152893 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 233569 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 304306 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 469449 15955435 ~ 15956038 (-) True G41442
AMCG00012967 mRNA downstream 65241 15405765 ~ 15412645 (-) True AMCG00012967
AMCG00012966 mRNA downstream 98938 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012968 mRNA downstream 104220 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012965 mRNA downstream 123730 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012970 mRNA downstream 153163 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012977 mRNA upstream 6375 15492361 ~ 15509522 (-) True AMCG00012977
AMCG00012975 mRNA upstream 26486 15512472 ~ 15522929 (-) True AMCG00012975
AMCG00012979 mRNA upstream 50683 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012976 mRNA upstream 68213 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012981 mRNA upstream 85007 15570993 ~ 15595338 (-) True AMCG00012981
TU50830 other downstream 2362399 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3224443 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6364810 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9021708 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13293723 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2394239 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2468077 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2690075 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2756764 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3491074 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000127_01764767_01770711.mRNA True 1992 mRNA 0.50 10 CI01000127 1764290 ~ 1770711 (-)