RNA id: AMCG00012970


Basic Information

Item Value
RNA id AMCG00012970
length 522
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00012970
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15317093 ~ 15324723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGTACTCCAGATAGGGTTTCTGGTACGATACCTCTCTGACCCCTTGGTGGGGGGCTTCACTACTGCGGCAGCCTTCGAAGTCCTTGTCTCTCAACTAAAACTAGTTCTTGCAGTGCCAATACACAACTATGATGGAGTTCTTTCAATGATATATACAATcattgacattttcaaaaatattcatCTCACCAACATTGCGGATCTGGTTGCGGGTTTGCTGACCATTTTAGTTATAATGGCAGTAAAGGAACTCAACACTAAATACCAGCATAAAATTCCAGTGCCAATTCCCATTGAAGTCATAGTGGCTATTGTTGCAACAGCCATCTCTTACAGTGTTAACTTGCAGGCAAAGTACAATGCACACATTATCAAGAGCATCCCAAGGGGaTTTCTGCCCCCTCAGCCTCCTGATATCAAGATGTTTTCAGACATTGTGGCCTCCAGTTTCTCCTCTGCCATCGTGGGGTACGCAGTGGCTGTCTCCATACCCACTGACATTGACAGGCTGTCTTGA

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51406 lncRNA downstream 38781 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 81231 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 239273 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 394777 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 580464 14733735 ~ 14736629 (-) True G41102
TU51558 lncRNA upstream 241786 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 314156 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 394832 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 465569 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 630712 15955435 ~ 15956038 (-) True G41442
AMCG00012971 mRNA downstream 12722 15267214 ~ 15304371 (-) True AMCG00012971
AMCG00012964 mRNA downstream 83986 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012958 mRNA downstream 104761 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012959 mRNA downstream 142845 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012956 mRNA downstream 237718 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012965 mRNA upstream 16434 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012968 mRNA upstream 30368 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012966 mRNA upstream 51753 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012967 mRNA upstream 81042 15405765 ~ 15412645 (-) True AMCG00012967
AMCG00012969 mRNA upstream 153163 15477886 ~ 15485986 (-) True AMCG00012969
TU50830 other downstream 2201606 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3063650 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6204017 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8860915 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13132930 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2555502 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2629340 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2851338 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2918027 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3652337 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile