RNA id: AMCG00012971


Basic Information

Item Value
RNA id AMCG00012971
length 819
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00012971
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15267214 ~ 15304371 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTCGGTCCTGGCAGCCATCGTCATCGCCAACCTCAAAGGAATGTTCATGCAGGTTCTGGATGTTCCTCTCCTCTGGAAGCAGAACAAAACCGACTCTATAATTTGGGTCTTTACCTGCATTGGATCCATAATCCTGGGACTCGACCTTGGGCTCCTGGCAGGTGTGGTGTTTGAAATGGCCACAGTGGTGGTTAGAACCCAGTTCCCCTCCTGCTCCGCCCTTGCCAACGTCCCAGGCACAGACCTCTATAAGAACATTAAGGACTACAAGAATCTTAGAGAAGAACCGGGAATAAAAATCTTCAAATGCAATTCTCCCATCTACTTCGCCAATATCGATTTCTTTAGAGACCGCTTGAAGGCAATCGTGGGGGTGGACGCAGTGAGAGTTCATAAGAAGAGGACCAAGGCCCTGAAGCAGATACAGAGACTCATTAAGAAGGGAAGGTTAAGAGCTACTaagAATGGCGTGGTGTCAACTACAGGCATTGACATCAAGGCCTTTAAGAAAGACAAGGACCCGGAGGAAGTGGAGGACAATGAAATCCCCAGCACACAGGTTGACATACAGGTGGACTGGAATGCCGATCTGCCGGTGAAAGTGGCTGTGCCAAAAGTTCATATCCACAGCCTCATCTTGGATTTTTCAGCTGCATCCTTTCTTGATGTCGTGTCTGTGAAGTCCTTAAAGCTGCCTGTGTGTTTGGATCTACTTCACCCCTTCTTCTTCCGCTCCTCTGGCTCTTTCTCCCCTCTTGGACTTGGTCGATGGACCGGCCTATGCTGTTCGGACCTCGTGGATTTGGAGGCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51378 lncRNA downstream 31352 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 189394 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 344898 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 530585 14733735 ~ 14736629 (-) True G41102
TU51203 lncRNA downstream 549650 14717234 ~ 14717564 (-) True G41088
TU51558 lncRNA upstream 262138 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 334508 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 415184 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 485921 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 651064 15955435 ~ 15956038 (-) True G41442
AMCG00012964 mRNA downstream 34107 15219333 ~ 15233107 (-) True AMCG00012964
AMCG00012958 mRNA downstream 54882 15176288 ~ 15212332 (-) True AMCG00012958
AMCG00012959 mRNA downstream 92966 15165950 ~ 15174248 (-) True AMCG00012959
AMCG00012956 mRNA downstream 187839 15078098 ~ 15079375 (-) True AMCG00012956
AMCG00012955 mRNA downstream 201601 15051963 ~ 15065613 (-) True AMCG00012955
AMCG00012970 mRNA upstream 12722 15317093 ~ 15324723 (-) True AMCG00012970
AMCG00012965 mRNA upstream 36786 15341157 ~ 15354156 (-) True AMCG00012965
AMCG00012968 mRNA upstream 50720 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012966 mRNA upstream 72105 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012967 mRNA upstream 101394 15405765 ~ 15412645 (-) True AMCG00012967
TU50830 other downstream 2151727 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3013771 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6154138 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 8811036 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13083051 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2575854 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2649692 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2871690 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2938379 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3672689 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile