RNA id: AMCG00012972


Basic Information

Item Value
RNA id AMCG00012972
length 1563
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00012972
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15526034 ~ 15531609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCCCTCTATtttgctctgtctctctctgtcccatgtttgttttcctctatTCCTCTTCTCATTTTTAGTTTGTACGTTAGGGGATCTTCATGGCTTCTCCAGGGTCTTACAGCGTTGTCATCATCCCACTGCAGAGCAGCTCGCACAGTGCACTTCAGTTCTTCCTCTGGCTGAAGAGGATGAAGGaactggagagggagaaggacaGTTTGTACAGTGGGCTGGAGGTACTGGACCAAGCTCACCGCTGGTTCTGTCACCGTATCTGGGAAATACAACGTAAACAGCTACCCACTGAGGCCGAAAAGGTGAATGCCTCTGAGCCCAGCCTGTATGACTCCAATATCCAGAGAATGAAAGCATGTCTTGGTAGCTTAATCTGTGAGTCTGCTGTGCAGGAATCCTGTGTTTGTAGAGTGGTGAGAGACTCCCTCACACACCGGAACAGACTGCTGCGCCAGGCCGTAAAGGAGAGAAACCTGCAGATATCCCTCCTGGAGCTGGAGAAAGAGCAGCTACTGCTGCAGCTGTCCCAGCTCAGAGGGAGCCGCACAACGGAGGGACTCATTCTGTGACTCTCTCCATTCTGTCCAAAGCACATTTGATCTTtgttcctgtgtttgtgtgcattcattttccttttagtCTTGATACTTTCTTTTACAAAGTATTCTTACTGCCTCTGAGATCTGGCACACTGAAGAAGCTGCAGTTTCTCAGCCACAGCCACAGAACACAAAACTAAGCAAATTCTGAGCTTTTACAGAGGGACCCAGTCGTGTGTGCTGCACTGATCATGGCACAGGTATTGCACACCCCCTACACCCCCAACAAACCCACTCTGACCCAGTTAAATTCAGTTGAAGAGTTCTATGTATGTCCAGCAGAGGGAGATATATTATAATTTCCCACCCCACAACTGTTGTGTTCCTCTCAAATCTATGACACTACTGTCTGCTTGATCTCAGAATGCAGGTGATTATACTTCCTATTGAAAGGGATTACATTGTCATTCCTGATGTATTGTAATGTTACTGTAGTCTTCCATGGTTCATGGACAATATATCAGACATAGGGACACATGAATAAGGCACTGTTGAAGACCCTGTACTTATATACAGTGAAATTAGGCTTTATTCTTtcactcaaaataaatacaatattttggaataagtttaatgttttttatttgatttttatttatgtattttgtaataaaatgtttttactgaTCCTCTAATCAGAACATAGAGGTTCAGTACAGAATGTGGCCCCCTCTCAATCTGGTTGTTTTAGCATGATGCCCTAATTTCGTCTCTTTATTACACCCCTTAATATGAGTTTGATGAAGATAtagcatatttgtttatttaatgtattaatttatttggtttaacAATATTAATGCAACCACGGAATCACACCATTATGGTGTTCAATTTTTATTACtcaattaccatttatttttaaataataagccATAACTTCACCATTTACATTGTCTGTATTTTGAAGGAATGTTGGTTTGttcgattttttttaaacaaaaatataaataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51439 lncRNA upstream 42713 15480691 ~ 15483321 (+) True G41265
TU51392 lncRNA upstream 224473 15301188 ~ 15301561 (+) False AMCG00012961
TU51390 lncRNA upstream 238218 15285341 ~ 15287816 (+) True G41230
TU51381 lncRNA upstream 240746 15237287 ~ 15285288 (+) False G41225
TU51457 lncRNA downstream 24537 15556146 ~ 15559305 (+) True G41282
TU51458 lncRNA downstream 34896 15566505 ~ 15569834 (+) False AMCG00012973
TU51460 lncRNA downstream 39297 15570906 ~ 15573468 (+) True AMCG00012978
TU51480 lncRNA downstream 187898 15719507 ~ 15722866 (+) True G41303
TU51492 lncRNA downstream 250817 15782426 ~ 15790144 (+) False AMCG00012987
AMCG00012963 mRNA upstream 50164 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012961 mRNA upstream 208690 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012960 mRNA upstream 246787 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012962 mRNA upstream 265109 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012957 mRNA upstream 301521 15212988 ~ 15224513 (+) True AMCG00012957
AMCG00012974 mRNA downstream 14026 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012973 mRNA downstream 34884 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012978 mRNA downstream 40147 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012980 mRNA downstream 84648 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012982 mRNA downstream 89126 15620735 ~ 15631003 (+) True AMCG00012982
TU51437 other upstream 46668 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 389305 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 892621 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 996228 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 1092833 14428313 ~ 14433201 (+) True G40999
TU51470 other downstream 89176 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3493952 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5738066 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5839234 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5895051 21426660 ~ 21486808 (+) True G42344

Expression Profile