RNA id: AMCG00012974


Basic Information

Item Value
RNA id AMCG00012974
length 3211
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00012974
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15545635 ~ 15554052 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGCCTCCAATTCACGCTGGTGGTGGAGGTGGTTTATTAGTATACAAACTTTCTGCCACAGTTAGTGTTTGTGAGAAGCTGCTGCTACATCACCCCACCCTGTTTCTGTCCCAGAATGAATGACATGAACCTGAGCCCAGTGGGGATGGACGCACTAAGTGTGTCCTCTGTGACTGGAGCCATTCCCGTGGGCTCTGGGCACCTGGGCCTGCCAGCTTCGCCCACTCACAATGCCATCACCACAACAGGCATGCCAGTGGCAATCCCGAATCTGGGGCCTTCCTTGGGTTCCTTGCCTTCTGCCCTCTCTCTCATGTTGCCCATGGGGCCTATCGGAGAGAGGAGTGTTATGTGTGGCATCCCAGAGAGGAATTACACACTCCCGCCTCCTCCCTACCCCCACCTGGAGGGCAGCTACTTCAGACACATCTTGCCTGGTATTTTGTCATACCTGGCTGATAGACCACCGCCGCAGTACATTCACCCCGGCACCCTCAACATGGACACTTCCCTCCCCGGGCCCAGCAACCCCTCCTCCATTGACCCCTACCAGTCTGGCGGGGCAGTGGGACTGGAGCCCAGCATGGTAGCTCTGGACTCCCGGCAGGTGGGTGCCCATGGGGGCTCCAGCCTCCATCAGGGCGGCGGCCACGAGCTGGATGGGGGCCTGTCCCTGGGCTCACGGGGGGCCAGCCCCATCTCCCCGGACAGTATGGGCGGAGACATGGCGATGGACAGGGTGGTGGCTGAGTCGCAGCAGCTCAGTGGGAGCTCCAGGAGCCACGAGGGGCTGGGGGTGGACTCGGGGGGGATGTCGTCCGAGGCCCACGCAGGTGTCATCCCCCTGCATGCAGGGGGGCTGGAGCTACCTGTTGTCATGGAAGCAGAGCATCTGGGAGGCAGGGTCTCCGACGGCGGTTTGGGGGAGCCCCTGCACTCAGTGGCGATGAGCTCGGGCTCCGTCAGCGTGGTGCTGTCCAGCGCCCACCCCATCACCCCTCTGGAACCCGTGTCCATTCACAGCTCCAACATGGGCATGGAGGCAGTCACTGTGTCCCCAATCACTGCCGAGGTGTCTCTGGGCCCCGATAACCTGCTGCTCGTCCCCTCATCTCTGCAGCTGGAGGACTCCAACTCCAATAAAGAGAACATGGCCACCTCCTTCACCATTTGGTGCACCCTGTGTGATCGGTCCTACCCCTCAGACTGCCCCCAGCACGGCCCTGTCACCTTCATCCCTGACTCGCCCATTGAGAGCCGCGCCAGGCTGTCTGTGCCCCGGCAGCTCGCCCTTAGAGCCTCTGTCATCGGGGAGGACGCCGGTGTGTTTGCACGAGAGCCTATTCCTGTGAGGACCTGCTTTGGGCCAATGGTAGGGCAGCACTGTAGCTCTTTAGATGTCTCTGACTGGTCAAACAAGACTCCTCACAACATCTGGAAGATGTTCCACGACAACGTTCTGGAGTTCTACATTATAACTGCAGATGAGAATGAATGCAACTGGATGATGTTTGTTCGCAAAGCAAGAAGTGGCGAGGAGCAGAATCTTGTAGCTTACCCTCATAATGGGAAGCTGTATTTCTGCTCGTCGAGGGAGATTTTGCCCGACCATGAGCTCCTCTATTACTACAGTAGAGACTATGCCAGGCAGATGGGTGTTCCCGAAGTGCCAAACGCACATGTCTGTCACTGTGGCAAGGAATGTGCGTCCTACACAGACCTGAAGTCCCATCTGGGCAGTCACAGTCAAGCCCACAGTCCCCCCCCGGCCCATGGCATTAAGCTGGGAGGTGGCCACTGGCCTGGTCATACCAGAGAGAAGAAGTTCAAGTGCAGCATGTGCTCTCGGGCGTTTGCGTCATCCACGAAACTCAATGTGCACTTTATGGGACATGTGGGCATGAAGCCCCACAAGTGTGACTTCTGCAGCAAAGCTTTCAGCGACCCGAGCAATCTCAGGACACACCTGAAAATCCACACAGGACAAAAGAACTACAGGTGTACCATTTGTGAGAAGTCGTTCACACAGAAGGCTCACTTGGCATCGCACATGGTCATCCACACGGGCGCCAAGAACTTGAAGTGCGACCACTGTGACAAGATGTTCATGCGGAGGCAGGATCTCAAACAGCACGtgctcactcacacacaGGAACGACAGAAGAAGTGCCCTAAATGTGATAAACTCTTCTGGCGGACAAACCACTTGAAGAAACACCTGAACTCTCATGAAGGCCGGAGAGACTATATCTGCGAGAAGTGCACCAAAGCCTTCCTGACCAAGTACCACCTCACCAGACACCTGAAGATCTGCAAAGGGCCCAAGACAGGGGAATCGGTGCAAGACctggatgaggaggaggaggaggaagaggaagaggaggaggaggaggaggaggaagtaCACAGGTTGATTGAGCCATCTAGCCAGGAGACTTGTGGATTAAATGGTGGGGGATACACCACAGACAAAACTATTCCAAGGAACAAGTAACTGGACATCTGTGTCATACCATTGTGTTTgcatgcgttttttttttttgcttatttgtccctcttttttctcctcccttttcatgtattgtttttattaagttcACTTTTAACCATATGGTAACTATGGCAACTGCATTTGGCTGATTATCAAAGAGTATGAGTAAGGCAGAGGTTATGCATACGTCctcaaatatatatgatataatttGATCACTGTTGTTTGTCGAGACAtcaatttattcatttcattacTTTGTGTACCTGTTTTATGCAAGGGGGATGTATTCTGTGTAATACATCTCCCTGTCTTTGTTAGGGGAGCCCCTCCACTGCTGTGCTCCACTATGCATGGGGAAGTAACCAGACTGAGGTATTTCTCTCAGCTGGTTGATCACACaacttttaatttactttatttaatccCTGTAACACATTCAACActaatttaaaagtttattttttactagCCATGTGCAGAAACAGatgtttaatcaattaaattattttagtcATTCcttttgcagtgttttaaaaacatacaagacTGTTGCAGCTTCTAAAAATGTTGGTGGCAGTGTATAAGTAAAGAATCTGTGATTtgtccttcaaaaacaaaagcttcatgcttgtgtgtgtgtgttagtaacTCTAGGATCAGCTCCAGGTCCCACAGAATCCACAGCAGCAGAATGGCTGGGCAGCTCGACCCAGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12463 PRDM4; PR domain zinc finger protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51439 lncRNA upstream 62314 15480691 ~ 15483321 (+) True G41265
TU51392 lncRNA upstream 244074 15301188 ~ 15301561 (+) False AMCG00012961
TU51390 lncRNA upstream 257819 15285341 ~ 15287816 (+) True G41230
TU51379 lncRNA upstream 260347 15260868 ~ 15285288 (+) True G41225
TU51384 lncRNA upstream 281062 15248378 ~ 15264573 (+) True G41226
TU51457 lncRNA downstream 2094 15556146 ~ 15559305 (+) True G41282
TU51458 lncRNA downstream 12453 15566505 ~ 15569834 (+) False AMCG00012973
TU51460 lncRNA downstream 16854 15570906 ~ 15573468 (+) True AMCG00012978
TU51480 lncRNA downstream 165455 15719507 ~ 15722866 (+) True G41303
TU51492 lncRNA downstream 228374 15782426 ~ 15790144 (+) False AMCG00012987
AMCG00012972 mRNA upstream 14026 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012963 mRNA upstream 69765 15420843 ~ 15475870 (+) True AMCG00012963
AMCG00012961 mRNA upstream 228291 15297962 ~ 15317344 (+) True AMCG00012961
AMCG00012960 mRNA upstream 266388 15274952 ~ 15279247 (+) True AMCG00012960
AMCG00012962 mRNA upstream 284710 15260248 ~ 15260925 (+) True AMCG00012962
AMCG00012973 mRNA downstream 12441 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012978 mRNA downstream 17704 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012980 mRNA downstream 62205 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012982 mRNA downstream 66683 15620735 ~ 15631003 (+) True AMCG00012982
AMCG00012983 mRNA downstream 77374 15631426 ~ 15639738 (+) True AMCG00012983
TU51437 other upstream 66269 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 408906 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 912222 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1015829 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 1112434 14428313 ~ 14433201 (+) True G40999
TU51470 other downstream 66733 15620785 ~ 15630627 (+) False AMCG00012982
TU52302 other downstream 3471509 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5715623 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5816791 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5872608 21426660 ~ 21486808 (+) True G42344

Expression Profile