RNA id: AMCG00012975


Basic Information

Item Value
RNA id AMCG00012975
length 5386
RNA type mRNA
GC content 0.43
exon number 11
gene id AMCG00012975
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15512472 ~ 15522929 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCGTATCCCCGGAGAGACGGACACAAAGTTGCTCGCTTTCCTTATCAGCATGACTGCCAGCTGCCAGCCAGCCCTGCAGCAGCACTGTCACGGGCGCCTGTGTTTTATAGCCTCTTGCTAGGTATCACCGGTTATGGAACACCACGAAGATGATAAACAACCTGTAGTTTTTAGAGAGGAGAAcaagagaaggaggaggaagatgaaaGCTTTTACCTCAAATGCTTTAGTTGCAATGGATCAAATAGCCATTGAATTTATATTGCCCACATCCAACAAATGCAATAAAGTACCAGAAAGCCTAATTCTTGACATTGCAGGGAACTGTACAGTCGACCAGGTTAAAACTCAAGTGTGGATGAAAGCAGTTTCAGCAAACCTGTGTCCGGAGTTTTATCAGACTTATACTCCTGACCAGTGCATTCTGCTTTATCAGAAGAAGGGACACTGGTATGAGATATATGACAAACACCAGGTATTTCAGACACTGGACTGCATACGCTACTGGAGAGCACTGAAGAAAGATCTAGGAAGAATCCATTTGGCTTCCAGACCGCAACCAACAGAAGAATCAAAGCAGTATCAAAATTACTTGAATTATCTGATTGGTTATGATGTCACAGATGTGAGCAACGTGCATGACGATGAACTGGAATTCACTAGGAGAAAGTTATTGACGCCAAGGATTATTGAACTAACAGACCGGGACCCCAACCTTTATTCCATGGACCCCTGGATAACATCAAAGCCTCTTCCAGAATACCTACTGAGTAAGATCAGCAATAATCATATTTTAGTTGTCATACACAGACATTCTGCAAGTCAGACCATAAAGGTGTCCATTGATGACACTCCTCAACAGATTCTTCAGACTTTCTTCACCAAGATTGCCAAGAAACGGGCATTACTTGGCATTCCAGAGGAGGTCAGTGAAGTGGATTTTGTTCTGAGAGTCTGCGGTCGGGAAGAGTACATTTTTGGTAACCATGCCATTAAGAATTTTTACTGGGTGAGACAGTGCCTGAAAAATTCTGAAGAGATCCACCTGGTTCTGGAGTCTGCGCCAAACCCTGACCAGGATGTGGTTCAGCTGGAAGACTGGTCGCTCGTTGACGATCGCACAGGTGTTGCTGGCTCCCATGAACAACTGACCATTGATGAAAAAGACCATGAGAAAGTGTTCACTATTTCCATGTGGGACTGCAACAGAAAATTTCGTGTCAAGGTTCTCGGCATAGACATTCCTGCCCTGCCTCGAAACTCtgaattgattgtttttgtggAGGCCACTATTTTCCATGGACAGCAGCTGCTGGCACAGGAGAGGACCTCCTCGAAGCCATTCACCGAGGAGGTGCTTTGGAACGCATGGCTGGAGTTTAACATCAAGATTAAAGACCTGCCCAAAGGCGCTCGGCTAAGCTTGCAGGTGTACTGTGGGAAGGCTCAAACTCAGACGGCCAAGACGAGTTATCAGGAAAGCGTCAACCACGATTCCAAATGCAAGAACCGCTTACTGTATTACGTCAACCTCATGCTGGTAGACCACCGGTCACTCCTGAGGCAAGGCGAGTACATCCTGCACATGTGGAAGATGCCGGAGAAGAGCGAAGATCACAGCAGTGTCAATGCAGACAAGCTCACCTCTGCCACCAACCCTGACAAAGACAACTCTCTGGCCATAGCCATACTATTGGATAAGTATTGTTACCCCATCGCTCTTCCAAAAAGTCGGGATTCTGTGGAGGTGGAAGGGGAAAGGGGGAAGCGGGAGATGCCGAATCACCTGCGCAAGCAGTTTGAGCAGATCGTCAGAACTGACCCCCTGCACCCACTGAGCCCAGAGGACAAGGAACTGCTGTGGCACTTCAAGCAAGAGTGCATGAGATTCCCTAAAGCCTACCCCAAATTTCTGAGCTCTGTGAAATGGGGGAAACATGAAGCAGTGTTGGCCACACATCAGCTGCTAGAGAAATCTGATACATGGGATCGCAGTGCTCTGGACGTGGGCCTGGCCATGCAGCTGCTGGACTGCAACTTCTCGGATGCGAATGTCCGTACGATGGCTGTGAGGAAGCTGGAGACCCTGGGAGATGATGACGTGCTGCGTTACCTCCTCCAGCTCGTGCAGGCTGTGAAGTTTGAACCGTATCATGACAGTGCCTTGGCTCGATTCTTACTCAAGCGTGCTCTGAGGAGCAAGAGAATCGGGCACTTCCTGTTCTGGTTCCTGCGCAGCGAGATCGCTCAGTCTATGCACTACCAGCAGAGATATGCTGTGATCCTGGAGGCCTACCTGCGGGGGTGCGGGGAGTCCATGCTGCAGGACTTCAAGAAGCAGGTGGAAATCACAGAGGCCCTCCAGAAAGTCACCAAGGAAATAAAAACGATGTCTGCTGACAAATATGACGTCTCAGTGCAAGttgtttttcagCTGCGTCAGAAGCTTGAAAATTTGCAGTCGTCGGGTCTTCCAGAGAGCTTCAAAGTTCCGTATGACCCTGGACTGCGAGCCGGAGCTCTTGTGATCGAGCAGTGTAAAGTGATGGCTTCCAAGAAGAAACCACTGTGGCTACAGTTCAAGCGAGCCGACCCCACCACCCTGTCCAGCGACAGCATCGGAATCATCTTCAAAGATGGGGATGACCTCCGACAGGACATGCTTATCTTACAGatTCTTCTGATAATGGAGTCGATTTGGGAAGCAGAATCTTTGGACCTGTCTTTGTTACCATATGGTTGCATTTCTACCGGAAATAAGATAGGGATGATTGAAATAGTGAAAGATGCCACAACCATCGCTAATATTCAGCAGAGCACAGTTGGCAATACTGGAGCATTTAAAGATGAAGTTCTGAACCAGTGGCTGCGAGACAGATGTCTTGAGGACAAGTTTCAGGTAGCCGTGGAGAGGTTTGTCTACTCCTGTGCCGGCTACTGTGTTGCCACCTATGTTCTGGGGATTGGAGACAGGCACAATGACAATATTATGATTACAGAGTCGGGGAACCTGTTCCACATCGATTTCGGACACATTCTTGGAAATTACAAGAGCTTCCTTGGCATAAACAAGGAAAGGGTCCCTTTTGTGTTAACGCCAGATTTCCTTTACGTCATGGGAACATCTGGCAAGAAAACCAGCCCCCATTTCCAGAAATTCCAGGAGATCTGTGTCAAAGCGTACCTGGCCTTGCGGCATCACACCAACCTCCTTATCATCCTCTTCTCCATGATGCTGATGACAGGCATGCCACAGCTCACCAGTAAAGAGGACATTGAGTACATCCGGGAGGCGCTGACCGTAGGAAAGACAGATGAGGAAGCACAGAAGCATTTTCTGGATCAGATTGAAATCTGCCGGGACAAGGGCTGGACTGTGCAGTTTAACTGGTTTCTGCATCTTGTCCTGGGCATCAAGCAGGGGGTGGAGAAGCGCTCGGCCTAACTTCCTCCTGGCTGTGCTCTGTCTGTTACTTGTGTCTCCTGCATTTAAAGTAACATCAGCCCCCCTGCAGTTATGACTTGATAAAGTATCACGTGTATATCATGCCAAGGTAAAACTCTCAGGCTTGTATAAAGAAAGGGTAAAACTCTTACTTGTGCTTAAATTCAGCTTTTAAATGCACTAGATTTCAGGCAGTCAAGGTGGAGCTGTCTGTAATCTAAGGTAAATCCCCAGGAAAAGCCATATCAAGACACACataaaagaatgaaacaaatgcTTGAATCTTTGCAATATTAAGAGTAGTTATTTCCTAAACTAACAGGAAGACATGTAAAAACACACCCTATAAGATATAGCTGTGAATTGAGTAATTTGCATTAGTGCCAATTTCTCTTCCAAAACCAGAACtgcagagaaatgtattttgtggaCTATACGACCAAAACATCATGAGAAAAACGGtagtttacattttcttaagttaacttattgaagaatgcattttttacaacatatacatatttttagatCACGTAAAAATTGAAACCATTTGACTAAATGTTGACTTCGTTtaggatgtttctttttttatatatatatatatatatatatatatatgtcttaaTTGAGGGTGGATGCATTGGAAAAGGTCGTACGGTGACAAGTTTCAGATGGTGAAAAGGAACAACATTCGGTTATTAATCACGGTTGCAGCTTTTTACTCACCTTGCTGAAATTTGCATCCACTGCTTGTGTATGAATATAAGAAGGATTGTTTCAAAATGTGAGTTAATTTAATAGACTAATGAGGTAGTGTAGTACAGATATTATAATAACATTGCATTGCTCCTATTTTTATCTACAGAATTTTTATATGTACAGAAAGCTTTAGATCTATTTTTAACAAATCAATATCCTCCACAATGTTGTCATACTGACTGAAGCAGTAAAAAAcctgtatgtttgttgttgtcagtgatgcagatgattttgtttttgagctgaaacgttttcattattttcactaGAATTTCACTCCCTTCATCCCTTAGCTTTCagggaattttattttattttatgtgtttcatCAATCATTTGTTAGGACCATGTTTGGTATATCGTGTAGGTAATGTGAGATTAATTTGCATCATGTGTACTGTGATTTTAATATGCAGTTTTATATTCAGAAGTGCCCGTGGATCGAACAACTGAATTTAAACATGAAAGGTTTCTCTGTAATCCAAGATGCTCACCATGAAATTCACTGAAGTGCCTTCTAAACTACTTCTGTTTGAAAATGCTTAAACCAGCTATCCCAATGCTATGTAGGCATTAATCAGGAACATAGCACAATGAATGtctgaaaaaaaatcttatttggAACCAATGGAGGGATTTGCTTGAAAGTTAGCAAATGTCATCAACaatatatatcccatatattttaaatatacaaaaagggaacaAGTACCAATTTTGGCATATAAGAAATATATGGATCACACAGTTCTACCATACCTTAAATGTTTGATTGTTCTATGTGGTGCTTGCAGAtgcttacaaaatgtaaaatgctaataattCCTAGCATTTACCAAAGATTAGTCTGGATCAATCTCACAAATCAGCcaacattgtaaaagctaaTGCATATTATACTAAcacaattacattacaaattactaTTTAAGAATAGGACATACACTTGCAAAAAGCATGTCCAGCACTGGGTGTTTAAAGTTTTAGTCTTGTTTGGTGTTGCGTATTGGCAATTAACTGAACGTAAATATCATAGTAGATATTTTTGCTTGAAATTTctttatgaaaatgcattttggatGTTTTTTAAACCCTAAATGTTAGCACTTTTTTAGAGCATGAATAATGTTTTGCAATCAATTTTGTGTTAAGGAATAAAGGCATAAGCAGTTTTAtatta

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
K21289 PIK3CG; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51406 lncRNA downstream 234160 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 276610 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 434652 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 590156 14842243 ~ 14922316 (-) True G41138
TU51218 lncRNA downstream 775843 14733735 ~ 14736629 (-) True G41102
TU51558 lncRNA upstream 43580 15566509 ~ 15569851 (-) True G41369
TU51575 lncRNA upstream 115950 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 196626 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 267363 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 432506 15955435 ~ 15956038 (-) True G41442
AMCG00012977 mRNA downstream 2950 15492361 ~ 15509522 (-) True AMCG00012977
AMCG00012969 mRNA downstream 26486 15477886 ~ 15485986 (-) True AMCG00012969
AMCG00012967 mRNA downstream 99827 15405765 ~ 15412645 (-) True AMCG00012967
AMCG00012966 mRNA downstream 133524 15376476 ~ 15378948 (-) True AMCG00012966
AMCG00012968 mRNA downstream 138806 15355091 ~ 15373666 (-) True AMCG00012968
AMCG00012979 mRNA upstream 13740 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012976 mRNA upstream 31270 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012981 mRNA upstream 48064 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012985 mRNA upstream 196584 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012984 mRNA upstream 203065 15725994 ~ 15758670 (-) True AMCG00012984
TU50830 other downstream 2396985 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3259029 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6399396 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9056294 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13328309 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2357296 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2431134 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2653132 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2719821 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3454131 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile