RNA id: AMCG00012981


Basic Information

Item Value
RNA id AMCG00012981
length 5383
RNA type mRNA
GC content 0.43
exon number 18
gene id AMCG00012981
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15570993 ~ 15595338 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCTGAAGACCGACAGGATGAGCGTATTGAATAAGCTGTGGACCGCAAGGAAGCTGCTCCTGGTTGTCCTCATCCCCCTGTTCCTGCTCCCGTTGCCCCTCATCTACCCGTCCAGTGAGGCCTGCTGCGCCTATGTGCTCATCGTGACGGCGGTCTACTGGGTGTCAGAAGCCGTTCCTCTGGGTGCTGCTGCGCTTGTGCCAGCCTTTCTCTACCCACTTTTCGGGGTCCTCAAATCCAGTGAGGTGGCTGCTGAATATTGCAAAGACACCACTCTGCTGCTCATTGGGGTCATCTGCCTGGCTGCCTCCATCGAGAAGTGGAATCTGCACAAGCGGATCGCTCTGCGCATGGTGATGATCGCAGGGGCCAAGCCTGGCATGCTTGTGTTAGGATTCATGTGCTGCACAGTGTTCCTCTCCATGTGGCTCAGTAACACTTCCACGACGGCCATGGTGATGCCCATAGCAGAGGCTGTATTGCAGCAGCTGATCAGCACCGGGATCTGTGATGCGGTGGACGACTCAGAGAGCATGGAAGCACAGGAGGACACTGACAAGGAAGGAAATATTGACAAGAACCAGCTTGAGCTCCTCTTTCAGACACACAGctgtaCAAAGAGTGATCTTATCACTATGCCTGAGGAGTTGAATGGCATGTCACTCAAATGCAATGATGAGGTGATAAACTGGCAGCACAATGGACACCTGCCCCAGACACAGATCATCATACCTGAGCCCCAGAAGAAGCAGACTTCCTTATATCCAACCAAGAAGGACCATATGATCTGCAAGTGCCTGTCCTTAAGCATTACCTATGCAGCAACCATAGGAGGTTTGATCACCATCACTGGCACGTCCACCAATCTGATCTTCGCAGAGCATTTCAAAAGcCGGTACCCTGATGCAAATGTGATCAACTTTGGGACCtggtttgtcttcagtttaccAATCGCGCTCATCATGCTAGTTTTGACATGGATCTGGCTGCACTGTTTGTTCTTGGGTTGCAATTTCAGAGACACCTGCTCCCTCAGCAAGAAACGCAAAACCCGGCGAGAGGATTACCCTGAGATTGTCACTGGGATCTTCTTCATCCTCATGACCCTGCTGTGGTTCACACGTGAGCCAGGGTTTGTGCCTGGCTGGACCTCCCTGTTTGAGAAGAAGGGATATCGCACAGATGCCACGATCTCTGTGCTGTTGGGATTTCTGCTCTTCTTAATACCTGCTAGAAAACCCTGGCCGTGTTCATCAAAAAAGAAAGACCAAGAAGGAGGCAGTCCAGGGAACGATGTTGACTCTGACCCCATGGCCCCCATGATAACCTGGAAGGACTTCCAGAAGTTGATGCCCTGGGAGATTGTCATTCTCGTGGGAGGCGGTTACGCCCTGGCAGCTGGGTGCAAGGTGTCAGGATTATCTGTGTGGATTGGAAGACAGATGGAGCCAATGAGCGGGCTTCCTCCGTGGACAGTGACACTACTGGCCTGTCTTCTTGTTTCTACAGTTACTGAATTCGCCAGTAACCCAGCCACCCTGACTGTCTTCTTGCCCATTCTCTCCACACTATCGGAGACCCTGAAGATCAACCCCCTGCACACCCTGATTCCAGCCACCATGTGTGTGTCATTTGGAGTCATGCTGCCCGTGGGCAACCCCCCCAATGCCATTGTGTTCAGCTATGGGCACTGCCAGATTAGCGACATGGTGAAGGCGGGCTTTGGGGTGAACCTGATCGGAGTGGTAGTGGTTATGCTGGCCATCATGACGTGGGGCGTTCCCCTGTTTCAGCTGTCCGAGTTTCCAGACTGGGCGTTGCAAAGGAATGTGACGGACAGCATCTAAAGCCATTGCAAAACTGGGGTGAAGGTGCAGTCTGGGGGGCATGTAGGGGAGGAACAGCCTACATGAGGAATTGCAATGCCAGTCCTGCACATTCACTCGATCATCCCTCAAAAAGAGCTTAATCTTTCAGCAATCACCACATCCAGCTATCTCTTCATCACGCGATTGGTGGTTTTGGAAACCCGATGAGCACTAAATCAGTCGGGATCTGGATCTTAGAGAGCATGACATGACTTCGAAGATTTTCCTTTGGCTGACTTAAATGTTGCACCTTTGGTTGCTTTCACAGCTACTTGGGTgtcacacataaaaacatgatgtCATTTGCCCCGTTCTCTACCTTTCTGATCCAGGAAACATGTCAAATGCTTGCTTTAAAACACTAGTTATCCTTGTCCTTTCTGAAGGCCATTAAACTGCACCTAACTTCCAACAAAAAAGACTGCAGATACTTCCACTGCTTTGAAACTTGAAATTGCAAATATAATTCTCTACGTTATGTGCCATGTTTTCAGTGCTTCTGGTTCTCGCACTTGAAAATAAATTCCCCAAGGGTTTGCTCCAAAGAGGCGGAATCGAGGCATCATAGTGGAACAAAGAGAGATGGGAAGTACATAACTGGCCATCGCTGTTCCTGGAGAGATGTCACACGGCAGGTTGTATTGATATCTGTATGTCAACAGTCGCTAAAAACCTGAAGCATATGGTCAATATCTTTAGTAAACACTTTGATAGAACAAACTAGAAGATCCTGAATCTTTCTAAGTGAATAGTCCTCCTATTGCCATTCTGTCTATGTCCTGTGCGTCTGTGAGAAGATGTACTTTGCACCTCCTGCGGTTCCATAGTGTGAGGTTTCATATCCACCAGCTACAGCAACACAACGTTGTCACCAGTTTATGTAGAAAGTGAGGACAGCAATACCCTCCACAGCCCAGGACCAATCTATCTTTGACATGAGCACAAGCATCACAGCCTTCAGTAATGAATCCTAATATATTTTCTCTACATGGTTCCTTCCTACAGATAAGCTAGGTATTTCCGGAACTGAATATATGGTTTAACTGTTTCACCTCTTGATATGGCTTCTTTAATTTTGGTGCTAGTGACAAACACAGGAGAGAAGACATTGGGATAATTAATGTGAACCAAAGATAACGTACACTGAGGAAATGTAAACCttgttattccctcatttgaCAGTTAAAAGAAACCCCAATTCCAGTGAGAACGACACAATACTTTAATCAAATTAAGATTGTTTATatcagtgtttcccaaccaaaatgtgtaaaagtaacacacaagaaaaataaaaagaagtcacatgtttttttcacttatttaagTTAAAGAAACTCCAGCCCAGATTCAACATCTCTGGACAGAGCAACTCAAGCATTTCATTGAAAGTGAGGCTTGTTTTAAGTTGTGGTGTAGGTTTGCTTTATGctggaaaagattaaaaataaaagatttgaCCTCCTGCAGGGTGAAAAACACTCTCTGTAATACAAAGCTTCTAGATGTTTAGttaaatattctgtattttatcagaatgaaaataaacagccaGCATGAGGGTATCTAAACCTGCTCCTGGAGACCTACAGAGTTGCCTGGTTTTAATTCAAACCAAGTTTTCAATTACACAACCGGACTAGTGATTTATCCTCCGTAGATTAGCATGGCCTTATCCCTCCGATTGAAGAGGTCTGCAGCTCACTAGACCTAGGCCAATCGTATTCATAACAAACCACATTTTCAGACAAGATGTCTTGtgaaaaaaagttatttgtgaCAATAGATAGTCTTAATGTgtttcttatacattttttgcagtGTTGGGGACACAATTTATCAGCAAACCAGTCGATAAACAAGATCATTAATGCAACTTTAGTAGCAGGGTcataaattcacattttattatacaatcATTATAGATTTAACATTTTCCCACAGAAGCTAATTCATTGTGTTTCTTGTATCTGAAGACACCAGGTATTTATATGCCTGCTTTACAGTGTATCAAAAAGTTAATGTTGTCTCAgctgtactgtaaaataaatacataatttatacatGGTAGTTAATATTCTCTCCAATTTTAGGACATAAACAAAAACTAGCTAGATCAATTAATATCTTAGCAATCACATAGATGATAGCAATGCCATCTTTCATTCAATACAATCTGTAAATGATCAATATGGATTAGATTTGTGTATTGGGAGTTGTAAAcccagtgattttatttatttaatttacacatgaatgtattataattgtatgtaaccATGTGCctttttaatattgttgttttatataatgaagattgatacaatacaaaattaccAACAGAGACTTGACCACTGTAacatctacatttaaaaatcattaaaaaataaaaacgtatttCTATCTTTTTGTGAAACCTTCTTTGCTGCAAAGCAGTCAAGTGTAATGTTGTTATCAGAAGAACCTTGATTTAATTCCATTATGGAAACATTAATAGGCCAACTAACTTCATAACCTTGTGATTCCAGCAGCCTCAGAACTACATGCGTTTTGTGAGGAAAGTTAAACTCTATACAGGCAGATGCACAGTTTTCCCCAAAGCAAACACATAGGTAAGACCATCATCAAGAAATAACTCCAGATAGGCATGTAATAGCATTAGTTCTTTAATGTATATTCTGGTAGGAAACAGCTTCATTAAAGCAAACTGACATTGCATTGATCAAGCACTCTGTCCTGTTGCTGGTTGACCAAGTTAAATTCCTAAATTATCAGTGGTTTTCTGGAAGGAAGAACATTAAAGGAGCATGACTTTTTGTTACAAAACCAGCCCCCTTCCCAATAAGAAATGGGACATGTCCAGGCCATGTGACCATGCAACACTTCCAGTCAACCCCCCTGCAGGACCCCTCTACAACAAGCccttcaattatttaaataatcacagGTTCAAGTACCAAAAGTACAAGAATTTCTGTTGCCAGTTCTGAGATCAAGAGTCTGAAAGGATGGCCGTCTCAAGTAAAGTGTTCTCTGGTGAAAAAGCACAAACCACTAACACGTGCTTTGACCTCTCATACAGCGCATAAACGGGTTATGGTGACTAAGAGCGTCTCCTCTATACCGCACTCCTTTCCTCCACAGATGGTACTATAATTTGGTAGACTGGTCCACAGGCTCAAACCCCTCTGTTTGAATCCTTTCCTTGTACTTCAAAAAGTCTCTTcgtttattgaaatatttcacCCACTGAGCTGGACAGCTGGACTCAAACTGCTTTCGCAGCTTCTCGCAGTGTGTCCCTTTATCCTCATTCTCATCCAGGCATCGCCATAACTCATCTCTCGCCCGCCAGCAAACCCGCCTCTCTTCTGCATTTGGAGCTGACATTGCGTGAGGTTTTTGCAAAATCTTTCcacaaataattgaaaactatATTGTACGAACTGAATCCATGTTTTCCTTCACTACATGACCCACATTGAGGACAAGATCCCGGAAGTACTTTTTA

Function

GO: NA

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51558 lncRNA downstream 1142 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 292681 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 335131 15235620 ~ 15235862 (-) True G41224
TU51335 lncRNA downstream 493173 15075434 ~ 15077820 (-) True G41191
TU51268 lncRNA downstream 648677 14842243 ~ 14922316 (-) True G41138
TU51575 lncRNA upstream 43541 15638879 ~ 15639990 (-) True G41386
TU51580 lncRNA upstream 124217 15719555 ~ 15722457 (-) True AMCG00012985
TU51593 lncRNA upstream 194954 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 360097 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 360761 15956099 ~ 15959544 (-) True G41443
AMCG00012976 mRNA downstream 5377 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012979 mRNA downstream 33770 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012975 mRNA downstream 48064 15512472 ~ 15522929 (-) True AMCG00012975
AMCG00012977 mRNA downstream 61471 15492361 ~ 15509522 (-) True AMCG00012977
AMCG00012969 mRNA downstream 85007 15477886 ~ 15485986 (-) True AMCG00012969
AMCG00012985 mRNA upstream 124175 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012984 mRNA upstream 130656 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012989 mRNA upstream 208619 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012995 mRNA upstream 318890 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012994 mRNA upstream 355498 15950836 ~ 15955239 (-) True AMCG00012994
TU50830 other downstream 2455506 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3317550 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6457917 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9114815 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13386830 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2284887 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2358725 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2580723 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2647412 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3381722 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile