RNA id: AMCG00012982


Basic Information

Item Value
RNA id AMCG00012982
length 2008
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00012982
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15620735 ~ 15631003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACCGGAATGACAAGGAGGCTGCATTGCGGAACCAAAGGGTAAGAAGTTGTTTCTCTGTAAGGCGGATCATTTCGGGGACGGATCGGAAGCAGCGTGGAGAGACTGGAAACTAAACCGCAGAACgtGAAATTAGCTGCTCTCTTCCTGTGAACCAGAGTTGACTGACAGCAGTTGCTTCTGATATTTTCACACAACTTCCTCATCAGAACAGAACAATGCTGAGAAGGGCGTCAGAACAGgtGTTCAGGCAGTTTGTCAGATATCAGTCAAGTGACATGAGCTCCTTCATTCTAGAGCGATCAATAAACCGGGTGCAGCTTTTGGGCCGAGTGGGACAAGACCCTGTGATGCGGCAGGTAGATGGACGCAATCCTGTGACCATCTTCTCCATGGCAACCAATGAAATGTGGAAGTCGGGGGAAGGTGATGTCAGCCAAAAGACAACTTGGCACCGAGTGTCAGTGTTCAGACCTGGGCTGCGTGATGTGGCCTACCAGTATGTGAAGAAAGGCGCTCGTGTCTTTGTTGAAGGGAAGCTCGATTACGGAGAGTATGTGGACAAAAACAATGTCAGACGCCAGGCCACCACCATTATAGCAGACAACATCATCTTTTTAAGTGACAACCTGAAAGAGAGATTATGACAGGCATCTGCCATGACTACCTGAATACCTCAGTCATGTCATAAGGAGCCCcaagatttcattttttgtttgttttttatatgttaTGTAAGCTTATTTTTGCTCTTGTGTTTTAGGTATTAAAGACAATGTTGATACTGGAAGTAAAACTGATACAGTAGACTTTGAATGCAAACCTACTTCCGTATCTTAATAGTGTTTAAATGTCCTGTCTTTATTCTGatctttcatgcattttaatggaCATAAGTATTATGTCTTAAAAAGAATCAACATGACACTGAAAACCGGAAACATTGTCTTCTCACAACGGATACGGTCTAGACTTGTATTCACCTTGTTATAAATACTGATGTCACACACAAGCTGATTTTGTTTCCAGTGAGAGAAGGTAGTTCCTTTTTAAAGGCTGAAAACATACCATTATCTTATCCACTGGAAATTGCAGGATTGTAGGCAGGCATAATGCATATCCCTAGCCTTGGTTTAAATCCATAGAATAATCAGTTTTTCAGACTGAGTCTTTTGCAatgatatgtttttttctttaactactGATTGACTGCCTTTCACAACCTAGAATGGCACAGAggttaaatacatgttttgtagTTAATCTTGCATTTCTGAGGGTCCAGATGAGTATTACAGTTTATGGTGatatttttaccatgtttttttttttctttatgcatattttatccttatttcattatataattcCTCAATTCTTCAAATCCTTTACTAATAAAGTGATACTACTTTGTAGATAAATTCAGATTATCATTTGAAGTAAGGTTTTGCTATCACTTTGTCCATCTATCTTGatcataaatatttgtactgtattttcaaaGCAGGATTTTAGACTTATTctaagcaaaaaagaaaaagcatgaaTAGGTGTCTGGAGCATGTAtattatatagtgcctttcataaatatcacaaagcacttcacagaagagtaaacttaaaataacaataaaactgtGTAATTGACAATGTATTAGAATATAATCACTAATAAAAAAAgttagaaattaatgaattttCAGATGAGAGttaaaaagtcatttttagttattttattttacaatccaGTCTCTCTTCTACATCCACGGGTCCATCCGAAAAACTCGTCACTGTACAATGAGGACATTGTCACGTGGGCACAGGCCTTTAACCTGTGtagttttgtaaactttcttacggTCAGTGGGACTAAATAACAGTTTCCATGTACATTATAAATCAATGCTTTCATTTAGCTGGGTTAACGCACAATTGGCGAGTGTGTGGAAAGAGGTTGATGCGTACAAGGAGTGATCGAAAATGCGATATTTTGGATTTGTATTCTTG

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005739 mitochondrion cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51460 lncRNA upstream 47267 15570906 ~ 15573468 (+) True AMCG00012978
TU51458 lncRNA upstream 50901 15566505 ~ 15569834 (+) False AMCG00012973
TU51457 lncRNA upstream 61430 15556146 ~ 15559305 (+) True G41282
TU51439 lncRNA upstream 137414 15480691 ~ 15483321 (+) True G41265
TU51392 lncRNA upstream 319174 15301188 ~ 15301561 (+) False AMCG00012961
TU51480 lncRNA downstream 88504 15719507 ~ 15722866 (+) True G41303
TU51492 lncRNA downstream 151423 15782426 ~ 15790144 (+) False AMCG00012987
TU51493 lncRNA downstream 151423 15782426 ~ 15791627 (+) True AMCG00012987
TU51494 lncRNA downstream 151423 15782426 ~ 15790144 (+) False AMCG00012987
TU51495 lncRNA downstream 151423 15782426 ~ 15790144 (+) False AMCG00012987
AMCG00012980 mRNA upstream 2291 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012978 mRNA upstream 48527 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012973 mRNA upstream 50792 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012974 mRNA upstream 66683 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012972 mRNA upstream 89126 15526034 ~ 15531609 (+) True AMCG00012972
AMCG00012983 mRNA downstream 423 15631426 ~ 15639738 (+) True AMCG00012983
AMCG00012986 mRNA downstream 74595 15705598 ~ 15715080 (+) True AMCG00012986
AMCG00012987 mRNA downstream 151361 15782364 ~ 15790169 (+) False AMCG00012987
AMCG00012988 mRNA downstream 212850 15843853 ~ 15859012 (+) True AMCG00012988
AMCG00012991 mRNA downstream 240089 15871092 ~ 15912709 (+) True AMCG00012991
TU51437 other upstream 141369 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 484006 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 987322 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1090929 14528162 ~ 14529806 (+) False AMCG00012940
TU51090 other upstream 1187534 14428313 ~ 14433201 (+) True G40999
TU52302 other downstream 3394558 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5638672 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5739840 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5795657 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5853904 21484907 ~ 21486808 (+) False G42344

Expression Profile