RNA id: AMCG00012983


Basic Information

Item Value
RNA id AMCG00012983
length 2290
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00012983
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15631426 ~ 15639738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaacaacaacacaaaaagaggGTCTTGAGTTTTTAAACGCGGCGGGGGAAAacatcaaaaccaaaacagcGTACCAGAATTGATAATAGTTTTTACTGAGCAAAAAGTAAGGAACTAGCGTGTTCGATCTGACTGGTACGGAATCGTTTGTTCGAACGATTACGTACATGAATCTAGAACTTATCATTCTCTCACCAACTTTGGTTTACTGATGATTTAGAAGAGCAACTAATTTTATAGGACTGCAAACCAAGAGCTGACAACGTAGCgggttttttttaagtgtgttgaTTTAATCGCCATACCAGTCATACACGATCCTTTTTATAGTCCTGCATACTATTCGGGGTCATCGGAGCGCTCGTACTGTACCTCTATGGAGATACTGGACAGTGGAGACCCGCTGTTGCACTGGGACAGGAATCTCAGCGAGCTCTCTGACCCCGGAGACAGCGACCATGGGCTGTACAATACACACTTCACCGAGCTCATGGATGATTTTTCCCAAGATGCTCTGCTGGGACAGCTGTTGAGGGACCCCTTTCTGTCGGGCCAGGGGGAGACTCTGGACACAGAAGAAGACCTGGCCGCTTCCCCTCCACCGCCACACATCCAGGCAGAACACAGCTACTCCCTGAGCGGGGACTCCCGGCCCCAGTCACCCCTCTCACACCTCCCTGGGGACGGGACCAGTGATGGAGGAGAGACGGACGGTGAAGGTTGGCCTATGGAGATCGACGAGAAGGTGCTTAAGATGGAGCCGATGCTATGCGAGTCCCCTGGCCTCCTCCCTGCTCTCGCACTCGGCCTAATCTCAGACAAGGCCGTTAGTGAGTCTCCCTCCCCTgctctctccctgcctgtctTGGTCTCCCAGCCTGCACAAGTTCAGGTGATCAAGTTGAAAGAAGCCGCTGAGAAGTTCACCCCCAAAATTAAGCTGGAGCCACATGAAGTGGATCAGTTTCTGAACCTCTCCCCTAAAGGTCTGGACTCCTTGAagctgccccccaccccaccaagCTCTCATGGCAGCGATTCAGAGTGGAGTCAGAGTCCTACCCGGCCCTGCCCCCCCTCCAGCCCCACGCAGTCTCAGGCTGTCCTTAAAGTGGCCCCGCTGGGACCTTCCTCCCTCACCAACTCTCCACTGCTCACTGCTCCACACAAGCTTCAAGGCACCGGGCCCCTCCTTCTCACAGAGGAGGAAAAGAGGACGCTGATCGCTGAGGGCTACCCTGTTCCCACCAAACTCCCTCTCTCCAAAGCTGAGGAAAAAGCCCTGAAGAAAATccgcagaaaaataaaaaacaagATATCTGCTCAGGAAAGccgaagaaagaagaaagagtaCATGGATGCGCTGGAGAAAAAGGTGGAAACGTGCTCCAATGAGAACAGTGAACTGCGCCGCAAAGTCGAGACTTTGGAGAGCACCAATAAGtctctcctgcagcagctgcacTGCCTGCAGGCCGCAGTTGCTGGCAAGGTCCCACGCTCCTGTCGAGTCACTGGCACCCAAACCACAACCTGTCTTATGGTTGTGGTGCTCTGCTTTGCATTCTTCTTGAGCAATTTTCCTCAGAGTTTTGGCCCCTGCTCCTCCATTGCCAAAACTAGCCTACCCAGTCAACTCACATCTCAGGAGTCTTACACAGCCACAGtGAAATCCAGGAGCCTCCTGGGTTATGAGGATCGCAGTGGCTTTGAGGAGCCGCACCCCTCTGGGCTGGCGGGGGAGAATGTGGAGAAGTGGGACAGGCGACCTGATTCCATATCAGCCTGGCACAGAGAGCAGCAAGCCTCGGAGAGACACGTAGCAGCCGAACCGCACACGCGGTACCTGAACAGCAGTGACTCGCACCTGAAGAAAGCCATACTTATAGATGTTCATCCTCACAGATCCCATTTGGAGCAGCGGGCAAATGAGACCACAAAAGTGATTGAGCTGGAGAGAACAGTGAATAAAACCTCCTGAGGTCTCCATTCCAGCAGCCCCCTGTGCCATCGCCGTGTCGGAGGCTTCTGCAGGCCACTGTGTCAGAGGCTGGAAActcttgtatttaaatatgctaTTTTTTACacatgtagattttttttaagtgtattttattccattctGTTATTATAttctacattattattcactcttaaacatgtgttttatagttgtatttctttgtttttttcattttaagcaaCAATGTAACTGCTTAGATTGATTTgataaatgtatctttttacTCTTAAGGCAtgatattttttcaaaaaagac

Function

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0060628 regulation of ER to Golgi vesicle-mediated transport biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0003330 regulation of extracellular matrix constituent secretion biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51460 lncRNA upstream 57958 15570906 ~ 15573468 (+) True AMCG00012978
TU51458 lncRNA upstream 61592 15566505 ~ 15569834 (+) False AMCG00012973
TU51457 lncRNA upstream 72121 15556146 ~ 15559305 (+) True G41282
TU51439 lncRNA upstream 148105 15480691 ~ 15483321 (+) True G41265
TU51392 lncRNA upstream 329865 15301188 ~ 15301561 (+) False AMCG00012961
TU51480 lncRNA downstream 79769 15719507 ~ 15722866 (+) True G41303
TU51492 lncRNA downstream 142688 15782426 ~ 15790144 (+) False AMCG00012987
TU51493 lncRNA downstream 142688 15782426 ~ 15791627 (+) True AMCG00012987
TU51494 lncRNA downstream 142688 15782426 ~ 15790144 (+) False AMCG00012987
TU51495 lncRNA downstream 142688 15782426 ~ 15790144 (+) False AMCG00012987
AMCG00012982 mRNA upstream 423 15620735 ~ 15631003 (+) True AMCG00012982
AMCG00012980 mRNA upstream 12982 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012978 mRNA upstream 59218 15571756 ~ 15572208 (+) False AMCG00012978
AMCG00012973 mRNA upstream 61483 15566493 ~ 15569943 (+) True AMCG00012973
AMCG00012974 mRNA upstream 77374 15545635 ~ 15554052 (+) True AMCG00012974
AMCG00012986 mRNA downstream 65860 15705598 ~ 15715080 (+) True AMCG00012986
AMCG00012987 mRNA downstream 142626 15782364 ~ 15790169 (+) False AMCG00012987
AMCG00012988 mRNA downstream 204115 15843853 ~ 15859012 (+) True AMCG00012988
AMCG00012991 mRNA downstream 231354 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00012990 mRNA downstream 288576 15928314 ~ 15950132 (+) True AMCG00012990
TU51470 other upstream 799 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 152060 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 494697 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 998013 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1101620 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 3385823 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5629937 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5731105 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5786922 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5845169 21484907 ~ 21486808 (+) False G42344

Expression Profile