RNA id: AMCG00012984


Basic Information

Item Value
RNA id AMCG00012984
length 6447
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00012984
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15725994 ~ 15758670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGAGTGCGGGCAGAATGGAGGAGTTCGACACCGAGGAGGAGGAGCCGTGGTACGACCACCACGACCTGGAGCAAGTTTTGGCACAGTCTTTTCACCCCAGCATCAGTCACATTCTGCAAGGGGCAGGACACCAATACCTGTCCAAGCAGCTGGAGATGCTGCGGGAAATGAACGAGCAGCATGCTAAGGTCTATGAGCAGCTGGATGTGACGGCCAGGGACCTGGAGCTCACCAACCAGAGGCTGGTCCTCGAGAGCAAGGCCTCCCAGCAGAAGATTGAGCATCTAACTGGAACCATAGAGACCCTGCAGACACAGGTGGATGCACTGCAGATACAGGTTGAAGGGATGCGCTCTCTGGAGACGCTCAGAGTCCGtcgggagaagagagagagacgcaagACCATTCACTCCTTCCCTTGCCTCAAGGAGCTCTGCTCTGCACCCAGGTATGAAGACGGCTTCGTAATCCGCAGCTCGGTGTCGGAGCTGGAAGTCAAGCCGCTGGAGCAGGAAAACGAGCAGCTGCGGGAGACGGTGACGTCACTGCGTTTGCAGGTGCAGCAGGAGCGGCAGCGGAAGGAGGGAGCCGAGCGGGAGTGTACCGCTGTGCTGCAGGAGTACGCCCACCTGGAGCGGCGGCTGCACAGCGCCGAGAGCTGCCAGTTGCGCATCCGTGAGCTGGAGACCGAGCTGCAAGAGCTGCAACAGATGAGGCAGACTAAGACCTACCTGCTGAGCGGGGAGGATGGCCTAACCCAGACCCTTCTCAACAATGCCCCGGAGACCGATACGCTGGAGGATGGGAGCCAGAGCCAAGCCTTGCCAGCCTCCAGCCCCGTACGCAAGAGCTGCAGCGACACCGCGCTCAACGCCATCGTGGCCAAAGACTCCTCTGGGCGACAGCAGGGCAGCTATGCTCTTCATGCCAACAGTGTGCGGAAGAGGGGCATGTCCATCCTGAGAGAGGTGGATGAGCAGTACCATGCCCTCCTGGAAAAGTATGAGGAGCTGCTGGGCAAGTGCCGGCGTCACGAGGAGAGCCTGCGTCATGCCGGAGTGCAGACTTCCCGCCCTGTTTCCCGGGACCCATCTATGAAAGACTGCCGCCCCCCGGACAGCGCTGGACCCACCCACCCCGAGGCTGTGGAGAGCATTAGCAAGCAGGTGGAGGCCGTGGACAAGCGACTGGGCCAGAACACCCCTGAATACAAGGCCCTCTTTAAGGAGATCTTCTCCCGCATCCAGAAAACCAAGACCGATATCAATTCTACCAAAGCCGGGAAGACCAGCAAGTGAAAGCCAACAGGGCTCAAGTGCACAGCCTTCTGCTTTCTGGCGTCCAGGGAAACTGAAAGAGTCTAGGTGATGGCAAACATTCCTGTGAGATTTGTTGTTCCACACTAGGGAGGAGTAGTGGTCATTCCTGCCGTCTTTTTTGTGGATGGCTCCTCCAAATgcatatatctgtatatataatatataataattccaTTATTCATCTCCGTATACTAATAAAGTTAGAATATaatgtttgttaaaaaacaacttctTTCAGATGTCTACCGAACATCTGGTGGATGGTGGAGCTTTCTGGAGTTATGAAAGAATCTGGGAACAAAAATCTGTCATCAGGGCAGCGGTTACATTCCTATGCAGGTAAAAAGGGCATCTTgcattgtgaaaatgttcaaagtcAACTCAGTGGAATGtgataaaatgaaataacattCTACACAGGAGAACTGAGTGCGAAGCTTCCCattaaacatgtaatatctCAGGGGTTCTCGAGGAATATTTACACCTGATTCTCATCTAAAATGTTTGAACAACACACACTAATAATCCCATGTCCTTCAGTTTTGATGTCCTGtgtcacaaatacaaaatattgtgttCCTTGATGCAATTAAAACTTCCATCATTGTGCcccagaaaataatattttagaaatgtgaCAAAAGGAtataaaaactaatttgaaaattACATGTGATATTATATTTAAACCTCTTCCCTTGGGCAGCTATAGGACCTTTAAAGGAGTAGCTCATATACTTCAGTGCTCTTGTACCTACCTGCATACATTTGCCGTAataacttcattaaaaaaataatcaaacacttCTCAAGGTTTCAATGTGAGGCAGTTATGCTTCCCTTTCAGTCAGCTATGGGAACTCCTTTGACAAGATCTAAGCTTTTCTTCACAAATCTTAGGGGTAAAAACATAGGAGTTGCTAAGTACACCTTAGATAAGTTACAATGTAGAGAATTAGAGTAGTTAAAGATAGAATATATGAACTGCTCCTTTGCATGTTCTAATTGTTCAGTGTGTTCAAAGCCTAACGTTCTGTCCACTTTTGTCACAGCAAGGATTAATGTTTTTCCTCTTTGACCATGTTGTCCGTCTTTGGTTTTTATCAAAATCACTTAAGTGTATGATGTCTTCTTTCCCTTGAAAGTTAAAATTGTGGCAGTGTCCAGTCACAGCCACAGCTGGACAGTGATGGACCTGTAGCCCTAGAGAGCTGATGTCCATACAGTGATTCAATCAGACCatgttctgtttatttactgTTGAACAGGTAGTCTTTCATTCAGGCtgcatttaatcacattttgaCAACACTACATGTCTCAAATAAGGCCTGTACCTCACTAAACATGTTGTCTTTGGTTCTATACATTTCAATAGatatgttcaaatgttttttctatacACCTTCAGCCCTGTAAAGAACAAAGAAAGACTCGCCAATTGTCCTGTGCACTGAACAAGGATTTTCTCACTTTCCAATTAAGTAGAGTGGCTGTTGAGCAGTTTGTTTATTGAATCCATAACTTCAGTTATGAAATCTGTGAAGGAGTTAAATGGTCTGATTACAATGAATCTGAGAGTTCCTGATGTTGATTTGAAGAATGCTAATGATTTGTGTAATTCGAAGTGTGGAAAGCCAACCATCACCCTGGCTGCACCAGTGAATACAGATGTTGAAATGATTTCCTCTTGgtagttttgatttatttccacaTGATGGAGTGTGAAGTTATCGATGATTACAAAATCACCTACAAAAGGTTTCCCCAGTGTAACCCTAATTCATTCTTGTGTGTtttcaagtgtgttttttttagttctttAGTACTGCTTTTCATATTTCTCTTCATCCCTTTGCCTTCTGTGGATAATGTGTTAAACATGTCATATACTGAATTCCTTTTATTACTAAATGTAATGTAGGTCAGTCCAGTGTTTGCACTGGAAAGGAATCCAGGCTCCTGTTGTATTGAAATTCTCACACTTTCAATCTctcaaactgattttaaaatgtttccattatgTACAAAAGAGTGACAGGGGTGTGAAGCAGCCAGTATCTGCTTTGGATGCTAATTTGCTGGTTACAACAGATAATTTATGGAACTAACACAATAAATTACTAATTACAGAATTTACTACTAAAATTAGCTAATAtctttattagtatttttgtaCACCTGGAAACACTTTGAATGAATACTCCGCTCCAGTTCCATTGTTTCTActgtgggagagagagcaaCTACATTGCTCTGATGTGGAGAGGCAATCTAGTTGGATTATCAAAGCAATAAAGGAAGTACAATCCACTCTCAAGATGAAATTCCTGCAGCACAAATAAGACTGTGGCTATGGAGCTCATCATTTCTGTCAGCACTATGCGGTAGAAAAACTGTACTAATACAAGAACTTGAGCTGTGTACAAAAGACAATACAAGTGTTATTGGTGTTACTAATAGGCCGGCAGTATAACTCACTTGATTTTGCTTGCAGATAACTCTCTGGGAAGGCTGCAGTGATGGAAACTTAATTAGATAGCTCTGTCTAGCCTGAAGTAACAGTTTAAAATCTTCTTTTTAGATTATCTTTCTATTGAATTTAGGCTCTGCCTTAAAACTGGCCTTTGCTAAGCCATAGAaaataatggtttatttcaaCGTTGGCTTATTGCACACTTAGCCTTGCTAATGCCAAACTGTGGTTTAAAAAGTATTGCCAAAACAGTGTTCGACTTCAGCCAGTGTCGGACAAGTGATTTTTAAACAACAGCTTTCTgccattcttttttatttttttattttacccaaGGCAGTTCAATTGCCTAGCATGTCTctatgcattattattgcattgctGTTATATAGTTCATACATATCAAGGTTTTGGTTCTAGGACTAGAATGACATGTGAAGACActaactttaactttaaacatttcatGTTCATCTCTTTTCATTGCATGAATTGAGAGTGGgatcaaatgtttattatacagCTGTCTTTAACCTGTACATGCAAAATGAGTATGGTTGATCCATGGTTCATCTAATTACACTCCTCTGTGCTGGGCTCTTCAGATAAGGtgtcttaattttaattacagatccctttttatttttccacaggtTAACCCAAATTTGAATGCCAGCTTCCAAGTGggttaaatatatttctcttgttttttttttttttatacttgaGTTCCAAATAATTCCCAAGTAAAATTAGTATCTCTAACTGACATAATGATCTTATGACACCATGCTGCAGAAATTCCAGATTATCTTTGATTTATAGTCACCTGCTTAACTGGCTCCAGTCTACATATGAACAAAAGCTGCATATGctcaaaacaagcaaaatcaaTCGAGGCACAAACATTCTCTGTTCCATATGGGgatgatatctttaaataactgATTCATGAGGATTTGAGCAGatgcaaaaatatatgtaattatactAATTTCATTACTGCTTAGCTGGTGTAAGTAATTAGGCTATACCAAGCTAGCTCAGAAAAACTTTTGTTACTGTGAAGATTTTTGGAAGCTGCATTTCTGATTACTTTCCTAATTTGGCAGGAATCCATCCTGGCAATAGCATCAACCTTTTACCTCCTCTAAAggtcaaatgcaaaaatatttaatatataatgtacaattCCGTGATGAAGACATAGGCCACGCTTACTCAAGAATACTTATAAAAAGCCATTTTGCTCTATTCTCTATTCTATTTATGATCTATCATTACAGTAATACTGCCCAACTGCTTGCAGTTCTATTGTATTTGATCAGTTTCCcttcagttattttgtttttctcccatttGTGATAAACCACTAGTAATGACATGAGACAAAAAATATAACTATCCCTCATTAGATCAGTCATACTTTTACAAGTCTATGCTTAGTCTATCTACACTTTACTAATTTAAGTCTTCAGTACACATTACATTCGAGCGTAGGGCACAGGGCTTTGTGCTTCCGGTTTACAGTAGTTCAAATCTTTTTCAATTAACCAGATTGTATTTCACACTACAGCGATCAACCAGTCTGACCGGTCCAGCAACAGATGACCATCTGGGATTGTCTACTGACTCGAACCTACACCATACATGCCACTCACCCAGTCCATCCCATTAAAACCAAATACCACTATAAAGGGATTTTGAGGAGTGGAGTCTCATGCAGGGTAAACAGGGAGTCAATAAGAACTATATGAGACCATGTATTCTGTGTAAAAAGGCaacaatacacaatattgtTGAATTGAAAAACGCAAAAACATCCTTTTACTGTATATGATGTGTGTAAGAGACATATACCTATCAGGAATGGAAGGAAAGCTGTAAAAATGCACTTCATGACATCCATCAGACCCTAAGCCCTAACTCAGGCTGCATTGGGCAGATTATTAGTATCTGCATGGCACCACTCTGCCACAGAGCAAGGCCTTGTTCTGAACTACAGTGGGTCAGGTTTCTCTCAGGGCAACTCCACTGGTTAGTAAACAGCATGGCAAGGAAATGGTATCTGCTTTTTTGCATTGAGGAAAAAACATGGTGATATTTGTTAAATGCTTGGTGAAATTAAATTTGGGGTATATGAAAAGTTGCCAAATTGTGTAACTGAACTTTATTTGCACAGCCTTATTTACCGGGTTACTCTTCAGGATACATTACATATTGCACTTAAAGATGCTTAAAGCATTTCTgcttctttatttcattttttgtaatcaaGTTACTGACTGATTACCAACATAGTTACTCCCTATGGTACCATGTGTATTTCAGCAAACACCTCACCAGCAGGTTATATGAGTGGGGAAATTGTCATGTCATACAGatgtttcatgtttatttgCCTTTCTATATCCTACTTGCTGTAAGAACTTCATAGCCTATTTTCCCCCATGGTGCCAtggattgtttaattaaaaaacctCTACAGTTCTGTAAACAAGCTTGTTGTACCTAGGTTAGCTCTTTcttgtttaatgcatttccaTTCTTCTAAAATGTGCTTATTGAATGAAGCCTGTGTTTAAACCTGCTTCATTGTAACCTCTTCTATTCCTTCcatattaaagcattttaagcAACCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51580 lncRNA downstream 3537 15719555 ~ 15722457 (-) True AMCG00012985
TU51575 lncRNA downstream 86004 15638879 ~ 15639990 (-) True G41386
TU51558 lncRNA downstream 156143 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 447682 15237290 ~ 15278312 (-) True G41243
TU51378 lncRNA downstream 490132 15235620 ~ 15235862 (-) True G41224
TU51593 lncRNA upstream 31622 15790292 ~ 15822009 (-) True G41402
TU51637 lncRNA upstream 196765 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 197429 15956099 ~ 15959544 (-) True G41443
TU51639 lncRNA upstream 201006 15959676 ~ 15960333 (-) True G41444
TU51640 lncRNA upstream 202687 15961357 ~ 15961841 (-) True G41445
AMCG00012985 mRNA downstream 3685 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012981 mRNA downstream 130656 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012976 mRNA downstream 160378 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012979 mRNA downstream 188771 15536669 ~ 15537223 (-) True AMCG00012979
AMCG00012975 mRNA downstream 203065 15512472 ~ 15522929 (-) True AMCG00012975
AMCG00012989 mRNA upstream 45287 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012995 mRNA upstream 155558 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012994 mRNA upstream 192166 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012999 mRNA upstream 212462 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 260060 16018730 ~ 16021747 (-) True AMCG00012997
TU50830 other downstream 2610507 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3472551 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6612918 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9269816 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13541831 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 2121555 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2195393 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2417391 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2484080 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3218390 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile