RNA id: AMCG00012988


Basic Information

Item Value
RNA id AMCG00012988
length 1281
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00012988
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15843853 ~ 15859012 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCCTGATGAAATCCGAATTCCTCCCGAGCCCCCGGGACGCTGCCCCGTCCATCTCCAGGAGAAGATTTTCAAACTGTATGAGCGAAAGCTTCATGATGACTTCGACACCAACAATCATATCCAAATGAAAAAGGAGTTCCGAAACCCCAGTATTTATGAGAAGCTGATCCAGTTCTGTGGTATTGATGAACTGGGCACAAACTACCCAAAGGACATGTTTGACCCCCATGGATGGTCAGAAGACTCCTACTATGAAGCTCTAGCTAAAGCTCAGAAAGTGGAAATGGACAAGTTGGAGAAAGCCAAGAAGGAGCGGACAAAGATTGAATTTGTGACAGGCACTAAGAAGGGCACCACCACCAGCGCAGCCGCCACCACAACCAATACTGCCAGTACCACTGCCGCAGAGGCCCAGAAGAGGAAGAGCAAGTGGGACTCCGCAGTGCCGGTTACCATCGCCCAGCCCACCATCCTCACCACCACTGCCACCCTGCCCGGTGTTGTGTCTGTCACCACCACTGCCAGCGGCACGAAGACAACCGTGATCTCTGCTGTGGGCACCATCCTCAAGAAGGCCAAGCAGTGATGCCGGCAGGCCAGTCAGCAGTGCTTGGGACTAGCGTGTTCAtcttggggggagggggactgTCTGGTCTCTctggaaaatgaaaggaaacttTCCCCACCACACCCTCATTCTCCACTTTCAATCTGTTCCCTGAATGTCAGATGGGTTATTTCTGCAGCCTGTTACCTATGTGAGACCCTCATGCCTTTAACCTTGATATCAATTTTAACCCTTGATGGGGTTTAATAGGAAAGTCCATTGAATATATTGTTCTGAAACtgagaaaaaacattgttttgtgtgattAAGTCAGAAGAAATTGGACTGGTATAAATCCTTGacgggactttttttttttcgtcttgTAATTTGCGGCCGATTTTCTTTTGAGCTTTCATGGACTTTGATGACAAAGCAAATAAAGTGTGCCCTTTAGAAGAAGCAACACCTTTTATCTTCTAGTATTTAACTGATCATCAACATCTGTATAGTTTCAACGCTACTCTAGAAAAGCTTTGTTTAGGTGTTGCAATGTATACGGTAACTACAACGAGAATCTCAACTGACGCCACGACAATGCCAGAGATCTGACTTTTCTACAAcagaaattcatatttttttatacatgtatatattgagaaaataaaatcaaaatccaaacaaaatcCATCTCTTATCTTACATTACTTGGTCTAATTTACACACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51438 lncRNA upstream 25511 15477179 ~ 15818342 (+) False G41264
TU51493 lncRNA upstream 52226 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 53709 15782426 ~ 15790144 (+) False AMCG00012987
TU51494 lncRNA upstream 53709 15782426 ~ 15790144 (+) False AMCG00012987
TU51495 lncRNA upstream 53709 15782426 ~ 15790144 (+) False AMCG00012987
TU51508 lncRNA downstream 52 15859064 ~ 15859370 (+) True G41325
TU51669 lncRNA downstream 214502 16073514 ~ 16074099 (+) True G41469
TU51686 lncRNA downstream 262431 16121443 ~ 16124871 (+) True G41484
TU51728 lncRNA downstream 474278 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 724390 16583402 ~ 16583699 (+) True G41536
AMCG00012987 mRNA upstream 53684 15782364 ~ 15790169 (+) False AMCG00012987
AMCG00012986 mRNA upstream 128773 15705598 ~ 15715080 (+) True AMCG00012986
AMCG00012983 mRNA upstream 204115 15631426 ~ 15639738 (+) True AMCG00012983
AMCG00012982 mRNA upstream 212850 15620735 ~ 15631003 (+) True AMCG00012982
AMCG00012980 mRNA upstream 225409 15616257 ~ 15618444 (+) True AMCG00012980
AMCG00012991 mRNA downstream 12080 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00012990 mRNA downstream 69302 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00012993 mRNA downstream 97809 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012992 mRNA downstream 98819 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012996 mRNA downstream 149931 16008943 ~ 16014310 (+) True AMCG00012996
TU51470 other upstream 213226 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 364487 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 707124 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1210440 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1314047 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 3166549 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5410663 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5511831 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5567648 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5625895 21484907 ~ 21486808 (+) False G42344

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069628 False 1574 mRNA 0.42 11 NC_007119.7 13064750 ~ 13098192 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_06625010_06627729.mRNA True 1348 mRNA 0.39 6 CI01000010 6624190 ~ 6627729 (-)