RNA id: AMCG00012990


Basic Information

Item Value
RNA id AMCG00012990
length 3964
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00012990
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15928314 ~ 15950132 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTGTGGGCGCGACAGTGTGCATCCTGAACCTGCAGTCAGAGGGGGGTGCTGTAACAGATGAGAACCCCCACCTGTCCTCATGCTGCCAACTTCTGGAGATCATCCTGCGCAAGGGGCTACAGCAGACCGTGCTGGGGCTGATCAGGAGAGACTACTGGCACTGGCTAGAGCAGTTACCTCAGCACGACCCTTGCGGAAAGTTAAGCCCGGTCTCAATGGCAGTGGAGAAGACAGCCTCGTGCATAAAGGTCTTGACCTCCCAGGGAAGGGGGAGGTATTTTCTGCGTCTGGCCTTAAACAGGAGGATTCTAGGAAACACAGTCCATCATTTCTTGCACACACCAAAGTTCTCAGAGTGGTATGATCCCGCTATTTCAATTTTAAGGAATGAGGAGTTTGTGGGTAAGAATTTCACCTCTTTCTAGCCCTTCCTGTCTCTGCTTCTGGTCCTGTCAGAGATGGAGTTCTCTCTTAATATTGAGaACTCTAGTTTCTTGGATGAAAGTTGGCTGATGCCGGTTTGCCAGATATATGAGACTGTGCCCTGCAGAGAGCTGGGAATGGTCCTCAGATACTTGGGGAAGCGAGTGTTTGTTCTGGAGTTGGTGGAGGGAAGTCAGGCCCAGGTGGACCAGTTTGTGCTGCCTGGTGACATCATCGATGAGATTAATGGAGTGTCACTGCGTAATGCCTGCAATGGCCTGGCAGGCGTGGTGTTGCAGCGGCTGAAAGGCCAGCCCCTGACGTTCAGGCTGATCCGTTGGTGCAGCTCCGATGGCACCGTGTACCGACCCATGGTGAAGCTGCTGAAGGCTCTGCAGCAAGAGAACCCCAAATTCCAGCTTAACCCCAAATCGCAAGCCCCAAGCCATGGAGGGGAGACACAGTGCCTGCGAGATGGCAGggtTGTATACATTGTGCAGTACTTAGGAAAAGCAGATGTAGGAATGtatGGGGGTAAAGAAGTCCTACAGCAGGGGATCCCACTGGTATTAGAACAGAAAAACCCCGGCAAGGTAGTGCTCTTTGATTTGAAAGAGACCCACGTGATCTGCACAGAGAAATCCTCCAAACAAGAGCTCTTCCAGCACCATTATCCAGATATCTCCTGTGTGGGCCGCTACTGCCGCCTCGATCAAACTGTCTTCGCCTTCTGTGTGGTAGATTGCCAAAAGATGCCAGAAATTTGCTCCTTCAGCTGTGTGGTGATGCAGGCCAGCTCTGCCAAGGACTGCGAGGAGATTGTGAACAGGATTGcCACTGGATTCAAACACACAGAGTGGTTTGTGTGAGAGCGAGCCATAGAAATGCACAACCTATCCAGGACAGTATGGCACCCATATCCTGGCATCTCTCTCCCTATCCATCTGTTccccttttttctctctctgttttactATCCCCTCCCATGTACATGTTCCCTCTAAACCAGTAGTACACAGCTCTCGTCCTTGTGGTCTACAATGTTTTCAGGTTTTCGAATTCAACTAATAGTTTCCTTAACTGAACATACTTGACCCTTTCTGAGCTGCTGGTGCATAGGGAGAAAGCCTGGTGGATCGTGGTCCATCAGAACGAGACTTGTGAACCACTCCTGTAGCACAACATATACAATCACTAGACCATCATATCTCACCCAATGCAATTCCTTGGTATAATCATGCTGTAATTTAATTGATAATTGAGCAGTTAAAGAGTATAGTTTTGCCAGGACCCTGTGATACAATGCTCAGGAAGGTCTGGTGTTGACTGTTTGTCCTGTATGAGTTTCAGTCCTGCATGAGTTAATTCGTATGGGGATAGGCAGCTGCCTGCAGAGAGAACTGCAACCAGAAGGCCCAGCACTGACACAACAGCGGTGACAAGCTCTGCTTCACCAGGTTATACCCTCCCCTCAACAAGATGTCCCCTCCGATTCCATCATTTTCAGGTTACATTATAACTAACAAAAACACTCTTCCCTCTGCCAGTCTGCCCCAGAGCTCAGTGTGCAGATGAACTCCACTGAAAAACAATCAGGAGGCAGAGGGCTGGCCTCAGAAATGAAAAAGTGAGAAATCCTGATTAGAAAGTAAAAATATTGGGATCTGATTAAGTAAGAGCTTGCATAGAGTCTCTGATCTACCATACAAGCGGTTAAGCATTACTGGTTGCCCttaatatgttgttttcttgggttctaatgctttgttttcataACTTACCGGATGTGTGTGAAGAACGCTCTATTTTTATGATGTACCTCAAATCAgcgtctctctccccctgtcctGCACACAGTAGTAATGTATATGGCTTTACTATAGCTCAACTCAAAGCATAAGAACCTGTTGGTCACCAGGACTAGGAGTGAGTATTGATGCCTTAAACCAGAGAGCATATTCAAGATTTGTTTATATCTTCAGAATGGATTATTATGATCCTGTGTTCTATTATCCTGTTCATCCCACCACCACCAAATCCATTTTTCAGCTCAGGTTTTGTAGTGTCCTCTCCACAGTTTGTATTAGAAGTTGTCAGACAATTGAGATGGCAGCTCCTTTTACCAACTTCCCTGCTACCCGATTATAGGACATCTGTGCTCCAGCTGCAATCACCCCCATTTCTAAAACTTATTTGGCTCTTCCAGTTTCAGCCACAGTCACCATTCTGCACATCACAGTAGATTTCTATTATTTTCAGCTGATACGTTTTCCTGAGTTTTATGTGTTCactaaatgtgaaaacaaagatCCACAAAGCAGTTATATCTCTTAATGGGTTTATTATGCTTATTATCAGTTTAATGTCTGAAGCTGAAACCTTTTATGCACTGGAATCTGTGGTATCTGACAACAATTCATCTTTGTCCAAGAATCCTTGTCAGCAGCTATTGAGCCCTGGAGCACCGAGTTTAACCCCAGTTTGTCACTGGGAGATGGTTGACCAGTGTTACATATAGACCAAACTGGCTCATTCTCATGAATAATTGTCAATACTTAAACGcatgtgaaatgtttgttttatttttcattaaatataatcaGACATAACACAATTTCACATACCAATGCActgtccattttaaaatatcccaCCTTGCAGTACAGTTAGAAGACGTCAACATATGGTGACACAGAATAATGCCTATGAGGACTCTGTGGTTTAGAAAAGGATGTTAGAAGGGTGAACTGTGGGTCATGCTTAGAGGAAAACAGGCCATTGCACCCTACTGTTGGAGCAAATGGTGCTGTTTATGAATATAGTCACAGGCTGTTTCTATGTGAAATGTTGGGTTGTGGATTGTAAGTACTTCTGTAGCTGAACTTGTATTCCTTTCACCCTAAACTCTGCATGAGGTCAGTTATTAACACCTGTTTTACTTGATTCTTTGATTTGGTGGACTTACTCACTAGTGCTAAACACTAGTTATCTACACCGGACAGTGTATTTGGGGCCACTGTGAGAACAGTGAGACTGCTTTCTGTATACAGTGGTTAAACTGCTGCAGACAACATACAAGACTCAATGCTGCTGGGATGCCAGTGTGACATTGTGGAATTGCAGCACATcagattactttttattttgccatgtTTGATGCTTGTGAATGTTATCCCTCAACTTGATGCAATTcaccatatgtgtgtgtatatactgtatattctgCTACTTCAGTAACTTTTATCTGTACTCTGGTTGTCAGATAATGAATCTTTTTAGCTGCTTTTAGCTAGCCCTTTTTCTAGTtattcttgttattttattattttattaattattattggaCTATTTTCCAACAATATAAAGCATTTCAAAGTTGAAGTCTGAATCTGTTTTTCTTAAGTGTCCTTatgacagaaatacagtaaCCTACAGTTCCATTACAGTTCTTTCAATTCAgagtttagaaacaaaatgtccTATGAAGTGGTgtgtgccattttatttttacttcatgtattagcagtgatttttttt

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51508 lncRNA upstream 68944 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 136687 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 138170 15782426 ~ 15790144 (+) False AMCG00012987
TU51669 lncRNA downstream 123382 16073514 ~ 16074099 (+) True G41469
TU51686 lncRNA downstream 171311 16121443 ~ 16124871 (+) True G41484
TU51728 lncRNA downstream 383158 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 633270 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 673288 16623420 ~ 16623650 (+) True G41537
AMCG00012991 mRNA upstream 15605 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00012988 mRNA upstream 69302 15843853 ~ 15859012 (+) True AMCG00012988
AMCG00012987 mRNA upstream 138145 15782364 ~ 15790169 (+) False AMCG00012987
AMCG00012986 mRNA upstream 213234 15705598 ~ 15715080 (+) True AMCG00012986
AMCG00012983 mRNA upstream 288576 15631426 ~ 15639738 (+) True AMCG00012983
AMCG00012993 mRNA downstream 6689 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012992 mRNA downstream 7699 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012996 mRNA downstream 58811 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00013000 mRNA downstream 72590 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00013005 mRNA downstream 187867 16137999 ~ 16145425 (+) True AMCG00013005
TU51470 other upstream 297687 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 448948 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 791585 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1294901 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1398508 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 3075429 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5319543 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5420711 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5476528 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5534775 21484907 ~ 21486808 (+) False G42344

Expression Profile