RNA id: AMCG00012992


Basic Information

Item Value
RNA id AMCG00012992
length 4091
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00012992
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15957831 ~ 15971238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCgggcctcctcttcctcagccTGTTCATGGAGGAGGGCTATCGTGACATTTCATTGATgtaCTTGAAGGAGTTTCGTACAGAGCAGTGCCCTCTGTTTGTGCAGCACAAGTGCTCCCAGCACCGACCCTTCACCTGCTTCAACTGGCACTTCATCAACCAGCGCCGCCGCCGCCCCGTCCGCCGCCGCGACGGCACTTTCAATTACAGCCCCGACATCTACTGCACCAAATACGAGGAGGGCTCGGGCAGCTGTCCTGAGGGGGACGAATGCCCCTTCCTGCATCGCACAGCAGGCGACACTGAGAGGCGCTACCACCTGCGCTACTACAAGACTGGCACCTGTATCCATGAGACAGATGCTAAGGGCCACTGCAGCAAGAACGGCCCCCATTGCGCCTTCGCCCACGGTCCCCAGGACCTGCGCGCCCCCGTTTATGACATAAGAGAGCTCCAGGCTATGGAGGCTGTTCAGAACGGCCAGGGAGCTGTGGAGGGCGAGAACACCTACGTTCTGTCCCATTATAAAACAGAACTGTGCAAGAAGCCCCCCCGCCTCTGTCGCCAGGGATACGCCTGTCCCTACTACCACAACAGCAAAGACCGCCGCAGGAGCCCTCGCAAACACAAGTACAGgTCGCTGCCCTGCCCCACAGTGAAGCACAGCGACGAGTGGGGAGACCCCACCAAGTGCGATGGAGGAGACGGCTGCCAGTACTGCCACACACGCACAGAGCAGCAGTTCCACCCCGAGATTTATAAATCTACAAAGTGCAACGACATCCAGCAATCTGGCAGCTGCCCCCGGGGCCCGTTCTGTGCCTTCGCTCATGTGGACCAACCAGGCTGTTGTGATGAGGCCAGCCCCACCCAGGCCTCCCTGCCACTCTTCCCCCATGGGGCTGTGGAGGAATCCGGTCTAGGGAGTCCCAACAGCTCCCACAGTGCAGAACTCCACACTGTCCTGTCCTGCAGTAGCAGCAACATGCGTGGTACCTGTACTATCTCCAGATCAGAGCAAGGCATGCTGGGAAGGTTGCTGTGTATGGAGTCCTCCAAAATGGAAGCACCTCTCTCCTCCTGGGCCGGGGGGGGTTATGGAAAAGCACCAGGATTTGAGCGAGAGGACCAGgcaaaacaaaaaccccacTTGCTGGAGCAGCGCAGCAGAGAgtcaatacagacacacagcaagCAGGACTTGCTGGGGCTCCTTCCGGTGGGCAGCCCTTTGGCATCCAGCATTTCTTCCAGCATGACCTCCAGCCTGGCCACAACCCCACCTAGCCCTGCACCCCCTGGCACGACCCCAGGAATGAACGCCAATGCCCTGCCCTTCTACCCTACCAGCGATACCGTGGAGTCAGTTGTAGAATCGGCCCTGGACGATCTAGATCTGAATGACTTTGGCATGGCGGCGCTGGAAAAGAGTCTGGATAGCAGTGCTGCGGTGCCCAGTACGGGTATCATGATTGGGGGCAGTCTGCTGCAGAGCTCGGCACCAGTCAACATCCCAGGATCCCTCAGCAGCTCCGCCTCCTTCCACTCCACCTCCCCTTCTCCACCAATTGGAGCACTCTCTTCCCATTTCCTGTCCTCCCACCTCCAACAACCCAGCCAATCAGAGAGGCAGGGATCTCCCACCACCCCTCCAGCCTTCCTGTCAGGTGGGGGGGAGCTGGCCCGTCTGCGGCATGAGCTGGATGACGCCCATGGCGCCCTCAAACATTGGGAGGAGTCCTGGAGACAGGCCACACAGGCATGCGAGGTGTGGAAGAGCGAGGTGGGGGAGGCACGCGAGGCGGCGGCGCGGCTGGGCCGGGAAGGAGCGTTGGCCCAAGAGCAGGGGCAGGCGGTCGACCTGCAGGCccagcagctggaggaggagctgggccGTATGACTGCCGGTCAGGAGCCCTTGTCCATGCACAGCTACCCGCACCTCAGCACTCTGCCCCTGGCCGCCCTCTACAGCCTGCAGGCACAGCTGCTCAGCGCTCTGGATCGAGTGGAGCAGgCAGTGTTCCAGCAGCAGAAGTTGAAATGCCTGCGGTGCCAGGAGGGTGGCAGGGTCACATTGCCATGCCAACACGGGGCTCTCTGCGAGGCCTGCTCCTGCACCCAGGACTGCCCACTGTGTGCCCCCCCCCGGACACTgagcctgcagtcctgaccggCCCTGTGTGCTTCTTAGCCCACCATTGTCCCGTCACGCCCCCTGACCAGCGCCGGTCCCATCTTTTGAGTGGCACATCTGGAGCGATCGACAGAAGCATCATTCCATTGTTTCAGGAGGTTCAGAATGACGAGGATCTCTAATTCTATTCCtgcagggctgcagtgtcttctgCTGTTCGTGTCTTTTGGAGCTCTAAGTTATGTAATCTAGTTCTCTTATCAATTAGacatgtataacatttttttaaacatattttacagttcaTTGCTTAAAATAGTCTTTTGAGTCAAGGTTAGAGCCAAAGGCAAAAGACAGTTAATTGTGGAATTATGTGAGATACTGCTGCCTTAGACCACATTATTGTCTTAGATCAGTTGGCTCATTTTGTCAGATCATTGAGTTGATTCTAGCTACCTTGCTCTTCAtcatcttttctgttttgtgagaAGATCTCTGCATgagcaaaataacattttttcatttaacctTCGACTGTATAAATACCCCCCATATCAAACATAAGTGTTAAACCAAGCAGAAAAATCTAACAATGGGCAAAGTGCATCAGCTTGAGTCAGATTGGGGGTTTTGTTCatccattaaaaactaaaaccagaAACATGTTAATGTAAGCTTACTAAACCAGTATAAGTagtatttataatacagtataaagtAGTGGTTCCCCCCCTCTCTACTAAGCAGCCCCCCAGAGTCTTTTTTTCTGCCAGGCAAACCCAATGATGTGAACTTACTTGAAGCAGGTGTGTACATATGTGTATGCTTGACTATTGTTATGCACAACACTGAATACAAAGACAACACAAATATGATTTAGAAACTATGTTTCTGGTGGGTATTGTATTTATCtagctgcatttttttttaattaatataacagTTAATTACTTTTCCCAACATACCCTTTTCATACACTCTTGGGATGGGGTGTGTACGATTTGGGTGTTAATAAGCTAATTATGCCTGCTTTATATGAATTCATTTATGGAATTGCCAGACTTGTTCTTGATCTTTAATTATGTCCCTTGAATCCCTACAACTTGTGTTTAAGTGTTATGAAACAAGACGCAAAGATTAAAAAGGTCACAAATATTTCCACTTGTGTTGCTCTAAGAAAGCATTACTGTACAATATAAGGGAGTTTATATGGTTAGAGAATTACTGAAGATAGACTGGTACAAATTAATATGCGAAAATGGGCCATACAAGATTTGCCATATAGGGTTATATGATACAGTTCTGTTAATTATacacatctgtattttttatggGGAGTTTGAAAGGCTCTGCATTGCTGATGGTTCTCAGTGAAACAATGGTCTCTGGGAGCAATTTTGTagaataaaatctattttttgcTAAGCAGGGTCTTCAGCCTTGtcattataaaaacatgaattcctTGTGATACACAAAACAGATACCAGTGAGTGATATTCCAAGggacatttttcaaaatgtatcagATATAATGGGGGGTGGAAACTGCCCTCCAAAAAAGTATTGGTTATGCCACACAATAGGATTtatgtgctgtatttttaaatttgaaaaaaattcTGTCTCTGGTAATGAAGTTTCGTTTAATGAAGTCTACTTGTTAATTGAAGTATTACTGTACAGTGGCTCTTAACAGTATTCACCCCTCCTtggatttttccacatttcattgtgttacatgAGAGagaaggtgcctctaccaaatatagactgaagggggtgattacttgtgcattcaattattttctgttttgtatttgtaattaatttgcagattatatttttcactttgacattatggacattggctgtgttgatcagtggcaaacactgattaaatccattctaatttcatgttgtaacacaatgaaatgtggaaaagtccaagg

Function

GO: NA

KEGG:

id description
K23048 UNK; RING finger protein unkempt

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51508 lncRNA upstream 98461 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 166204 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 167687 15782426 ~ 15790144 (+) False AMCG00012987
TU51669 lncRNA downstream 102276 16073514 ~ 16074099 (+) True G41469
TU51686 lncRNA downstream 150205 16121443 ~ 16124871 (+) True G41484
TU51728 lncRNA downstream 362052 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 612164 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 652182 16623420 ~ 16623650 (+) True G41537
AMCG00012993 mRNA upstream 831 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012990 mRNA upstream 7699 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00012991 mRNA upstream 45122 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00012988 mRNA upstream 98819 15843853 ~ 15859012 (+) True AMCG00012988
AMCG00012987 mRNA upstream 167662 15782364 ~ 15790169 (+) False AMCG00012987
AMCG00012996 mRNA downstream 37705 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00013000 mRNA downstream 51484 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00013005 mRNA downstream 166761 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013006 mRNA downstream 184441 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013009 mRNA downstream 464826 16436064 ~ 16437861 (+) True AMCG00013009
TU51470 other upstream 327204 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 478465 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 821102 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1324418 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1428025 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 3054323 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5298437 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5399605 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5455422 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5513669 21484907 ~ 21486808 (+) False G42344

Expression Profile