RNA id: AMCG00012994


Basic Information

Item Value
RNA id AMCG00012994
length 1052
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00012994
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15950836 ~ 15955239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGATCTCGTATTAAAAAGGTACGTACGTTTGTTACTTTTCGCTTCTTTGATAAAAAGATCTGGTTGATGTAGTCCCCCTGCCGTGCGGAGATCCGTGTCCTGAAGACGGCCGTGCTGGGCCTGTCGAGAGCGGCAACTGGGGTTTTGGCGGAGAGCCACGGCCTTGTGCTtctggagggggagggaggctTATCAGCCCTGTGGCATTAATGGCAGCTTGTCAGTTGATCTAGTTATTTTAAACGCGTTTAAGTGTAACCATTTCTTTTAAAACCGCACTTCGGTGGCGTCTTGAGTCTAGGAGGGAAGAGACAAAAGGCCGTGGTGTCGCCAGGCTGTCTCCGGGGCTAGGCCTCGCAGCGAAGGTTATGCGTGCGGTGGTACTGATCAGATGGAGTGGCTTTATTCACCCATCGCCTCCCAGCGGCCACCCTTACAAGCCAGGGCTGCAGTGGAGGAAAGGCGGGGGAAACGGGCTCGGGGATCTGATCTGGTTTGACCAGCGATTAAATCGGCTTGTATCACTTGTATATTGGATTCCCGGGAGCTTTAATTTGCCAAAGCGGTTATTCTCAGCACTTAAACGGTGTATATGAGCGGGACTGTGCCTTAGACTCCTCCCCTGAGAGTCGGGTTTTGTTTGAAGGGTTCCGCAGTCGGCCCTTTTGggagaaaaagtaaataaagcgGGGGCGACGTGGTTGAACATCGCAGGTGGAGGCGCTTTATTTGAGAAGTGTCTTGTCTCTAGGTAAGCAGACATGGCCCGTACCAAGCAGACCGCCCGTAAGTCCACCGGAGGCAAGGCTCCGAGGAAGCAGCTGGCCACCAAAGCGGCGAGGAAGAGTGCGCCCTCTACTGGAGGCGTGAAGAAGCCCCATCGCTACAGGCCTGGCACTGTGGCTCTGAGAGAGATCAGGCGCTACCAGAAGTCCACCGAGTTGCTGATTCGCAAGCTGCCCTTCCAGCGCCTGGTGAGGGAGATCGCTCAGGACTTTAAAACCGACCTCCGTTTCCAGAGCGCTGCTATCGGAGCCCTTCAGtTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51593 lncRNA downstream 128827 15790292 ~ 15822009 (-) True G41402
TU51580 lncRNA downstream 228379 15719555 ~ 15722457 (-) True AMCG00012985
TU51575 lncRNA downstream 310846 15638879 ~ 15639990 (-) True G41386
TU51558 lncRNA downstream 380985 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 672524 15237290 ~ 15278312 (-) True G41243
TU51637 lncRNA upstream 196 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 860 15956099 ~ 15959544 (-) True G41443
TU51639 lncRNA upstream 4437 15959676 ~ 15960333 (-) True G41444
TU51640 lncRNA upstream 6118 15961357 ~ 15961841 (-) True G41445
TU51643 lncRNA upstream 10698 15965937 ~ 15966308 (-) True G41448
AMCG00012995 mRNA downstream 26432 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 142151 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 192166 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 228527 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012981 mRNA downstream 355498 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012999 mRNA upstream 15893 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 63491 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 82644 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 126022 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 145077 16100316 ~ 16104419 (-) True AMCG00013004
TU50830 other downstream 2835349 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3697393 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6837760 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9494658 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13766673 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1924986 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1998824 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2220822 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2287511 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3021821 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU231026 True 799 lncRNA 0.48 2 NC_053127.1 31910912 ~ 31912412 (+)