RNA id: AMCG00012995


Basic Information

Item Value
RNA id AMCG00012995
length 855
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00012995
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15914228 ~ 15924404 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGTGTGATCTCCGGCAGAGCggctgtgtaaacaaggtcagcTTGCTGCAGTCGACTCTCACACGGAGGCGTGTTTTACGCCACAGTCTGCTAagccttttcttttattttattttctttatttaaaactgtgttCAACAAAGAACGGCTACAGATCTATATCTTGCTATCAACTGTTCAGGAAGGTTATTAACTTGCAGAGATGATGAAAGAGTGTCTACAGTTCTTCATTGAGCCAGCCAAGAACCTCAAGACCCGCTTCAAGGACTCTCGGAAGAAAGCCTTGCGAAATGAGAAGAAAGAGCCTCTGGTGGAATGCCAGCTGTTCGTTATGGAGTTGGCCAGGGAGGTGAATCGAGTGTGCCAGAGCTCAGACATTCTACGTCACATCTGGATGAACGAGGACATCTGGAGCCCAGAGGAGTGTCGCACCTTCATCCTGGAATGGGCTACTGTGATAGAGAGCAAGCAGACACCGATGCAGACTGATGGCTGCTCAGAGAAATGGGACTTCAGGGGACTGGGATGGGGCGAGCAGAAGGTTGAGGCTGCCCAGAGGGTTATCCTGGACTGGACAAGAGAGCTGAAGACCAAACCAGAGcGCAGCGTGTGGCCGGGGGAGCAGGTGCTTCTGATGCTCGATGACCTGGAGGCGCAGTGGAAGCGCGGCCGGCTCCCCAGTCTCCTGTCCGCCATGGAGCTGCTGCTGTGGGCTGTGCTGAGAGAGGGCAAGGACAAGGGACTGATTCCTCAGCTCTGGCTTTCCAAGAAGCAAAGAACCCAGAAAATTGATGCAGCAAGATACATCCCACACTCAGTGTGGAACTGGATCTGTGATGCATCAGGACGATAA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51593 lncRNA downstream 92219 15790292 ~ 15822009 (-) True G41402
TU51580 lncRNA downstream 191771 15719555 ~ 15722457 (-) True AMCG00012985
TU51575 lncRNA downstream 274238 15638879 ~ 15639990 (-) True G41386
TU51558 lncRNA downstream 344377 15566509 ~ 15569851 (-) True G41369
TU51406 lncRNA downstream 635916 15237290 ~ 15278312 (-) True G41243
TU51637 lncRNA upstream 31031 15955435 ~ 15956038 (-) True G41442
TU51638 lncRNA upstream 31695 15956099 ~ 15959544 (-) True G41443
TU51639 lncRNA upstream 35272 15959676 ~ 15960333 (-) True G41444
TU51640 lncRNA upstream 36953 15961357 ~ 15961841 (-) True G41445
TU51643 lncRNA upstream 41533 15965937 ~ 15966308 (-) True G41448
AMCG00012989 mRNA downstream 105543 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 155558 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 191919 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012981 mRNA downstream 318890 15570993 ~ 15595338 (-) True AMCG00012981
AMCG00012976 mRNA downstream 348612 15554199 ~ 15565616 (-) True AMCG00012976
AMCG00012994 mRNA upstream 26432 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012999 mRNA upstream 46728 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012997 mRNA upstream 94326 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 113479 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 156857 16081261 ~ 16085241 (-) True AMCG00013002
TU50830 other downstream 2798741 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3660785 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6801152 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9458050 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13730065 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1955821 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 2029659 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2251657 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2318346 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 3052656 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile