RNA id: AMCG00012996



Basic Information


Item Value
RNA id AMCG00012996
length 756
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00012996
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16008943 ~ 16014310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCCTGATGACATATGACAACGTGGAGCTGTCATTCACTGATGCAGAGACTCTGCCAGAAGCTTTCAGGAAAAGTAAGAAAGGCAGTGTCTACATGACTCCTTTCAGGGTCATCTTCCTGACCAAAGGCAAGGACTCCATGACGTCTTTCATGATGCCCTTCTACCTGATGAAAGGCTGTGAGGTGAAGCAGCCAGTCCTTGGGGCCAACTACATCAAGGGAACTGTGACTGCTGAAGCCGGAGGGGGCTGGGAAGGTGTTGCAAACTTCAAACTTGTGTTTAATTCTGGAGGCGCAATTGAGTTTGGGCAGTACATGCTCCAGGTGGCATCACAAGCTTCCAGAGGGCAGCCCGTGATTGGTGCTTATGGGTGCCCCTATATGGCCAATGGAGCCTTTGCCTACCAGCCCCCCCCTGCCAACGGGATGTATGGTGGACCTCCACCAGGCTATACCTACCCACCTCCACCAGCACCAGCTGGGTTTTATCCTGGTCCTCCTAATTTTGACAATGCTGCAGCTTACATGCCACCCCCTCCCTATTCCGAACCAATGGACCAACCTTCTCTGGACCCAAGCCTGCCTAACACTACAGCAGGTAGCAGGAAGAACAATGTCCATTGTGGAAATggggCACAAGCTAAAGCAGCAGAGGCAGCAGCGAGCGGGACCTACTCCTCTCCTGGGCCCCACGTCTACATGCCCCAGGACAAGCCTCCTCCCTACTCCCCACCAGAGGACAAGAAATCCCAGTAG

Function


GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51508 lncRNA upstream 149573 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 217316 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 218799 15782426 ~ 15790144 (+) False AMCG00012987
TU51669 lncRNA downstream 59204 16073514 ~ 16074099 (+) True G41469
TU51686 lncRNA downstream 107133 16121443 ~ 16124871 (+) True G41484
TU51728 lncRNA downstream 318980 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 569092 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 609110 16623420 ~ 16623650 (+) True G41537
AMCG00012992 mRNA upstream 37705 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012993 mRNA upstream 51943 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012990 mRNA upstream 58811 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00012991 mRNA upstream 96234 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00012988 mRNA upstream 149931 15843853 ~ 15859012 (+) True AMCG00012988
AMCG00013000 mRNA downstream 8412 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00013005 mRNA downstream 123689 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013006 mRNA downstream 141369 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013009 mRNA downstream 421754 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013017 mRNA downstream 628606 16642916 ~ 16677331 (+) True AMCG00013017
TU51470 other upstream 378316 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 529577 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 872214 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1375530 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1479137 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 3011251 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5255365 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5356533 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5412350 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5470597 21484907 ~ 21486808 (+) False G42344

Expression Profile