RNA id: AMCG00012997


Basic Information

Item Value
RNA id AMCG00012997
length 1590
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00012997
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16018730 ~ 16021747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtccttgttttgcATCCTGACTTTTTCTATCTTCAAAGGTTTAGGTGTGAAGCATTGGGTGACGAAGATGGATAAAACGCATCTGTGTTGCATCATCTGCCTCGACCAATTCAAAGTCCCAGTTACCATACCATGCGGGCACAATTTCTGTCAGAAATGCATCAATTTGCACTGGGACACAGAAGAGGCAGCTGGGAAGGGTTTCTACTGTCCTACATGCCGGATGAGTTTCGACCAGAGGCCCCCACTCAATAAAAATGTTACTCTTTCCTTTCTGCTGGAGTCCTCCAACAGTTCCGACTGGGCCCCTGCTTCTGTGCAAAGCAAAGGTGATGCTGGGACATGTCGCCAACACAGCAAACCTCTGGACGTCTACTGtaggacagagagagtgtgcGTATGCTCTGAGTGTATGATCCAGAATTGCAAAGAGCATGACTGTGTGACTGTGGAGAATGAGAGGAAAGACCGAAAGGTAGAACTCaatgaaaagaacaaacaaCTAATCAAGCAAATCAATGATACGTCAAGGAGCATTGTGGAACTAAGGGACAATATTGCCAACACCAAGGTCTCACTGGATCAGTCCTCAGAATGGGTGAAAACAAAGTTCACCCAGTTGCTGAAAAGTATGATGGAGATGCAGGAGGCGGTGCAGCTGTCCATAGACAAGGAGAGGCAGTCCGTGGTGACAGAGGCAGAGGAGAGGCTGGCATTACTAGAGGAGAGAGCTGAGCAACTTCGGAATAAACAGGAGCAGATAGAGACTCTTCAGACTTTGCCAGATGTTAACTTTCTTCAGGAGACCCAGGTCATTCAAGTGCCACGGATGAAGAAAGTGCCGCTAAATGTCTCCTCCGATCTCCAAAACAAACTCCATAAGGTGACTGGTGTCCTATCCAACATCTCCAAGCTGGTTTCAGAGGACTTGCAGAAGGTCGTTAGTGTAGTTGGTGCACAGGACAGAAAAGATTCTCCTGAGGATAAACAGACTCCAGAGTATGTCGTCCCAAACACTACTGCACCTGCTAACCCACTCTCTGTGAAAAGCCACCATGCACATTACCGAAATCTGTTGTTCGATCTCAACACCGCCAATGTCAACATCAAAGTGTCACTGGGGAAACGCAAAGCAGAACATGTGACTACAGGCGTTCAGAACTACCCCCCCCACGAGGCACGTTTTGAGCACATGTGGCAGGTGCTGTGTGCCGAGGGGCTGCGGGATGGGCAGCACTACTGGGAAGTAGAGGTCTCCAGATACTGGGCCTACCTAGGGGTGACCTACAGCTCCATTCCAAGGAAGGAGAAGAGCAAGAGCTCCATTCTGGGTATGAACAAGGTCTCTTGGAGTCTGCAGCTGTTTGAGAGGCAGCTCTGTGCTTGGCATGCTGGCAAGAAGGAGGTGGTCACAGGGAAGGCACAGTACAAGAGGATTGGTATGCTTCTGGATTGGCAGGCTGGCACACTCACCTACTACGGTGATGGCCACACCCGTCTGCACACCTTTCATTGTGCCTTCTCCCAGGAGCTGTACCCAGCTTTCTTTATTGGAGAGGAAGTGAGTATTACATTGTGCCCACCCTAA

Function

GO: NA

KEGG:

id description
K12031 TRIM65; tripartite motif-containing protein 65

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51651 lncRNA downstream 2709 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 7366 16011012 ~ 16011364 (-) True G41454
TU51649 lncRNA downstream 8488 16009836 ~ 16010242 (-) True G41453
TU51648 lncRNA downstream 9336 16008942 ~ 16009394 (-) True G41452
TU51647 lncRNA downstream 10939 16007414 ~ 16007791 (-) True G41451
TU51660 lncRNA upstream 13900 16035647 ~ 16035936 (-) True G41460
TU51713 lncRNA upstream 147562 16169309 ~ 16208177 (-) True G41506
TU51721 lncRNA upstream 195634 16217381 ~ 16217595 (-) True G41510
TU51729 lncRNA upstream 311484 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 601672 16623419 ~ 16623773 (-) True G41538
AMCG00012999 mRNA downstream 18848 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 63491 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 94326 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 210045 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 260060 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012998 mRNA upstream 16136 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 59514 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 78569 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 86868 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013003 mRNA upstream 124496 16146243 ~ 16154855 (-) True AMCG00013003
TU50830 other downstream 2903243 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3765287 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6905654 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9562552 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13834567 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1858478 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1932316 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2154314 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2221003 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2955313 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile