RNA id: AMCG00012998


Basic Information

Item Value
RNA id AMCG00012998
length 2236
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00012998
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16037883 ~ 16074028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTTTTAAACCGTGTTGTCGTAGGGAAGGAATGGGCAGCTGACAGCACAGATGCGATTAGTGTGCACATGAAGTTTATCCCGTGGTTTCTAGTATTAGGTTATATATGgattttaacattattacatttctaaatcCAGATTCATTTTATtagaaattatgtattattattatttattattatttattattctgtggACTCAGACTAGATCAACTGCATTAACGACTGCATCACCGTTGTCCATTCAAGCTGAGTCTATGTGCTGTAGCCTGTGCgaatataaatgcattcattaatttgtatctAATGTTGGACACAAAATATAtggatttgtttcttcttcctcgtattaaaaagtcaaatgttaTATGGATTAAAGTACCCATACATGTTCTGAGACAAACTATTTTAAGTGAGTCTGCATACGATAACGTGTCAGGACCTCTGTGTGAACTAATGCACTTCCGAAGTCCAAAGGTCTGTATAGTGGGCAGTGGACCTGCAGGTTTCTATACTGCACAGCACCTGCTTAAGAATCACCCAAGCCTTCAAGTGGATATCTACGAGAAGCTGCCTGTGCCGTTTGGTCTTGTTCGGTTTGGAGTAGCACCCGATCACCCTGAAAACGTGATCAACACTTTCACACAGACTGCCCACCAGGAACGGTGCAGTTTCTATGGGAACGTCAGCGTGGGCTGTGATGTCACCGTGGAGGAGCTGCAGCGAGCCTATCACGCTGTCGTACTGAGCTATGGAGCAGAAGGAAATAGGAGATTGGGTATCCCTGGAGAAGACTTGAGTGGGGTGTACTCTGCTAAGGATTTTGTAGGCTGGTATAATGGGCTGCCCAGCAATAAAAAGTTGAAGCCGGACCTGAGCAGTGAGACGGCTGTTATTTTGGGACAGGGAAACGTAGCTTTGGATGTGGCCAGAATATTGCTTTCTCCCTTGGACCTCCTCAAGAAAACGGACATTACAGAGGAGTCCCTGGAAGCCATTGCAGCCAGCCAGGTCCGCAGAGTGCTGATTGTGGGTAGAAGAGGACCCCTGCAAGTAGCCTGCACCATCAAGGAACTCCGAGAGATGATTAACCTTCCAGACACCAAACTTCTGCTCGATCCCACTGACTTCAAAGGACTAAAAGATGTGTTGAAAGATCTCCCCCGTCCCAGGAAGAGACTCACTGAGCTGATGTTGAAGGCCCTGGAGAAGCCTGTAGGGAAAGACATGGAGGGGGCTGCCCTTCGCTGTTGGGGGTTAAAATTCCTACGCAGCCCCCTGGAGATCCTACCCAGCCCTGATGGCACAAAAGCATCTGGCATCCGGCTGGCACTCAACAGGCTAGAGATATCTGGGGAGGAAGCCAGGGCTGTACCTACTGGGGAGCACGAGGATGTGGACTGTGGTCTGATTGTCAGCAGCATCGGATACCAGAGTCTGCCCATTGACCCTGCCGTGCCCTTTGACCTTAAACAGGCAGTAATACCCAACACCCTTGGCAGAGTGGAACAGGTGTCTGGTCTGTACTGTAGTGGCTGGGTGAAGAGAGGTCCCACAGGCGTGATTGCCACCACAATGAATGACAGCTTCGACACGGCTCGCTCTGTGCTGCAGGATGTGGAGTCTGGGCACCTGGACTTCAGCAGCCCCAAGCTAGGCTCTGAAGCCACGAGAGCTCTGATGGAAAAACGAGGAGTGGTTCCAGTGTCGTTCTCTGACTGGGAGAAGATAGACAGTGCAGAGGTACGGAAGGGACAGGAGGTCGGCAAGCCCAGAGAGAAACTGCTGGATATTGGGGAGATGCTGACCTTGGCCAGGGCCTGAAGGAGCTCCAACCTTACTGCTAATAGCATAGTCGGAACTGGGCTGAGGGACTTTGCCTCCACTTGAAAGCACTCATGTTATCAAGACTACAAAGCACATTCCTCTGAGGAATCTGGATGGTTATTCCTCATGTTTTCCATTCCCTTAAACCAATAACGCTTATGTCCTGAGGTATCTTCTCAGCCAACACTCTTCACAAAACCACCgcattattttgaatgcagaATTTCTCATGGTGTTGAAGGTAGTCTGTTTCCCTCTCATACCAGGGTTATGATCTGCCCTTActtttagttaattaaaaacaattcaaaggTGTTCATTGAAGATGAAAATGACATTGTGAGTGTCTGAAACATTGTGATGATGCTTTCTGAGTCTATAAAGAGAAACTGTTTTAGTTTGTAAGA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K18914 FDXR; adrenodoxin-NADP+ reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51660 lncRNA downstream 1947 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 21862 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 26519 16011012 ~ 16011364 (-) True G41454
TU51649 lncRNA downstream 27641 16009836 ~ 16010242 (-) True G41453
TU51648 lncRNA downstream 28489 16008942 ~ 16009394 (-) True G41452
TU51713 lncRNA upstream 95281 16169309 ~ 16208177 (-) True G41506
TU51721 lncRNA upstream 143353 16217381 ~ 16217595 (-) True G41510
TU51729 lncRNA upstream 259203 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 549391 16623419 ~ 16623773 (-) True G41538
TU51754 lncRNA upstream 560934 16634962 ~ 16636441 (-) False AMCG00013018
AMCG00012997 mRNA downstream 16136 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012999 mRNA downstream 38001 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 82644 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 113479 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 229198 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00013002 mRNA upstream 7233 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 26288 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 34587 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013003 mRNA upstream 72215 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013007 mRNA upstream 176109 16250137 ~ 16251210 (-) True AMCG00013007
TU50830 other downstream 2922396 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3784440 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6924807 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9581705 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13853720 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1806197 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1880035 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2102033 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2168722 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2903032 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile