RNA id: AMCG00012999


Basic Information

Item Value
RNA id AMCG00012999
length 5119
RNA type mRNA
GC content 0.46
exon number 32
gene id AMCG00012999
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15971132 ~ 15999882 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTCTCGGACTGACGCCTGACCGTCACTAAAAATGATGGTACCATCCCATGACGGAACAGGACAACCAGAGGACAGTCAGCGGAACCCAGAGGCCCCAACCTACAGAGAGGATGAGGACCCAGAAGAGGCACATCGAAGACACAAGGAGTTGGAGCTGAAGCCCTTGTACAGAGAGCTACTGTACACAATACACTACAGACTAGGCAAGCCTGGCCCTAACCATATCTCTGACAATGCACAGCTCTTTCAATACATCAAGGAGCCTCCTGTGTATTGTCTGATGGTCACAGTCAAGGAAGCGAAGGGCATTTTGGGAAAAGATGTCAGTGGCTTCAGTGACCCTTACTGCCTGCTGGCCATTATATGCACAGAGGATGAAGCCTCTGGAGACCAGAGCAAGAGGGATGGGCACCCTTTGTGCAAGCCCAAGAAAGCCATGGTGAAGAACGCGATCCCAGATGAGGAGATCTACCAGACTCATGTCAAGAAACAGACCCTGAACCCCATCTGGAATGAAACCTTCATTCTGGAATTTGAAGATCCTGCTACAGCCAACCTTCACATGGAAATGTGGGACAAAGATGAAGAAGTGTCACTGGGACAGAAACTAGAAGAGTTCAGGACAAACTTTCAAGGATTCAAGAGAATGATCAAAGATGCAAAGAAGATGAAAGGCCAGGATGATTTCTTGGGGAACGTGGTGCTAAAGCTGCAGGACTTGCACTGCACTGAGGATCAATGGTACATCCTGGAGCCCCGAACAGAGACCTACCCAGAGAGGGGGAAGTGTCACTTACAGCTCAAATTCATCCACAAAGAAAGAGATGGTGTGCTGAGTGCTGGCCGGACTGCCTACGTCAATTATTGCGGGATTCTGCAACAGTTTGTGCAGTATGACATCTCCCAAAAGAAGCAAGGCAGTGTCACTTGGAAGGGTGAGCTTAGCAAGGAAGCACAAACCCTGCTGGACCTCCACGCCACCCAAAACGACCTTTCCCCCTTCCTGCAGGATATGGGAAAATGGGTGGCTTACAGTAAACTTTACCAGAAGCTGGAACTGGATCATACAGTTCTGTTGCAACAGATCACCAGCATTGAATATCAATGGGCTTTACAGGATCTCCCATATCCACAGAAACAAGAGTTGGGCGACTCCTTTCATGCCTTCCTGCAGTATGGCCTCTCCCTCATCTCAAAATACCGAGATGTCTTCCCTATCGCCAAAGCCCAGCGTCTGCACGCTCTGCTCAGGGTGATGGTCCAGATCTGTAAAACCAAGGCCTTTCAGAAACTTAATCCATCCAATTTTGATCTTCAGCAGGAGGTGATAGAATCTGTTCAGCTGGGAACTAGGGAATGGttcaacattaaaaaaggacTCCACCAGCCAATGATGAAGGATGTTACAGAGATCATCACTGCCCTCTCCAGTTTGGTAACAGAGGTAAAGGAAGACATTCGACTTAGCAAGGACGTGTGGAACAAGGTGTTTTCCAGTGCAGTGCAGCTGGATGTCTTTACAGTGGTCTACCTGGAGCAGGACACCTTGGTGGCAGTGGAAGTGGGCGAAACCCTGAGCAGTGTGGAGGATAAAATTGACATGCAGTTGGCAGCCACTCTCTTTCCACTGTATTTGAGTCTCAAGTCCATCCACAAGGACAAGGCGTTTCTCCAGAAGAGGGGGAAGGTGCTGGCCCTGACTGAATTTCACGTGAGGTTCCGCGATGCTCTCCCTCACTGGCTGAACAAGGCCTACAACACCACACTGGAGAGAGTGCAGAGGGCAGTGCAGGTTGACCAGCTCCAGCCGCTGATCGACGGCTCCGTTCCCATCAAGCACAGCTCCTCGGCCGTGGACCTGGCCGCTTGCCTTCACCCCATCTGTCAGATGTGGAATGAGCTGAGTTGGCCAGACCCTGAGGAGGCCTTCATGTTGATGGTCAAACTCACTGAGGACATGTGTAAGATTGCGCTGACGTACTGCAATTTGATCCAGCAGAGAGCTAAAGAGCTCTCCGACACATCGGACCACAGCAGCAAAGTGAACAAGCTCTGTGTGGTGGTGAATAACATGGAGCACCTGAGGACCATCCTGAATAAGCTCCCCCAGCAGTTGAACTGGGACGGGCTGCGGGAGAGCATCAAGCATGTGATTGGGGAGGACCAGTTCCACAACACTTTGCCCTCCCAGCTGCAGCACTCACAGAACGTGCTGGCCAGGCAAATCCGTGCTGCACTGGGAACACTGGGACAGCAGCTGCGCTCAGACATTGAAAAGCACATAATGAACATGGCTGCCCGTCGCAGATATTCATCCAGCACAGAAGATGCAGTGGTGCCATTGATGAGGTATATGGAGAAGGAGCTGCATTACATGAATGAGAACTTGGTACAGGAGAACTTCAACAGTCTCCTGAATCCTCTCTGGACCAACTCCATCAAAATCCTGGACAACGTGTCCAAGCAGCAGAACAGTGTTATGGAGTTCTTCCAGCGTGTGCACTACACCCTTCAGtgtctgGAGCAATGCTTCCATGCAGATGGGAATGGCTTGTCTTTGGAGACGCTGCACACAGAAGAGTACAAGGCCCTAAAAGCTCATCTAGCACTGAACTCTCTGAGCAGCCAACAGTTGATAGAGAAGTTCCTGGAGCAAAAAGTCTGGGAGCAGAAAAGCTACAGTAGTGAGAAGTATGGTGCCATCACGCTGATAGGATCCTACAAGAAGTCTGACCAGCAGCTTCACATTGAAGTCCTCAATGCTGTCAGCCTCATCCCCCTCGACTCCAATGGCTCCAGTGACCCTTTCGTCCAGCTCTCCCTGGAGCCCCGGCACCGCTTCCCGCAGGTCGAGTCCAGATGTACACAGATCAAGAAAAGTGACCTCAACCCTCTCTTCGAGGAGTCCTTCGAATTcCGGGTGCCGGTTGAGCAGTGCCACGCGGCGGGCTCCTGCTTGGTGCTCACTGTCCTGGACCACGACACACTGCGCAGTGACGACTTCGAGGGCGAGGCCTTCCTGTCACTAAGGGCCATTCCCGGTATCGGGGGCTCCCAGGAACAGGCACCTAACGCTCAGATCCGACTGCCCCTCATGCACCCCAAACGCAATGAGGACAATATTCTGAAGATGCTGGAGTCCAGGAAGGGGGATCGAGAGGCCCAGAGTTTTGTAAAGCTGAGGAGGCAACGGGAGAAGAAGTCGCAGGagatataaaaagaaagaggggacactttgtggggggggggggggggggggggGCATCACCACAGACATTTAGTCTGGGACAATCATATCATTTTATAAACTCCAGCAAATATTAGGgtttgaactgtttattttctttatcactACTTGCAGTGGAACACATTGGAAGCTAAATCAATGCATCAGCAAAATGCCAGTTAAAATGGGATTGGAGGAGTTAACTCTTGTGTTTGATTGACAAAGGCAAAATAGGATCAACAACGTAAACTATCTTTGTTTGTCAAAAAATAAGTCACTTGGTTTGGTCATTAACAGCTTATTCTGAGTTGAAttgagaggggaaaaaatacaggTAAAGTGACCTCAAATCACcttaaaagaacaaaatgcaCACCTTAGCACTAGTACACTGCTACCACATGGCAGGATCTCTGAGACAGAGATTCTCCTTGCCTGTCCTTTACACGAGATCCCAGAACCAAAAGATGCACTTGTgacacatttcagatttctgTAATTCCTAAAGAAGAGGTAAGATAACTTTCAGTTTAGCTCAAATTAAGGTCAACAAGTGTAGCGCATCTAGGTCAATGTTGTGACCCAAGATTTTAAATCACTTATCATTCCATCATTAGATGTTCCATTCTGCACTGCTTAGCTGTAGCCactcacaaatacacattttgtatataatttccTTTCGCGCTGTGCTGCTGTTAACCCAAATCTGTACTTTAACCTAATATCAACCCCAATCCTTTAAACAAACCCTCTTCTGGTGCTTCTTAAAATACCCCGTTCAGACTTCTAGACTCTGTCTTCCCGGTTCTGCAATTTATTAACTTTTGTCACCAGTGCAACGCTAGCTTAAACTACCCAGTAAGGAAGATGATACTGAAGAGTCACCTTAAACAAAGgcattattatttaatcctCTATGTATCATCTAAATCTTGTATAATAACAATCTGCAAACACATCCCAGTGGTAAATGAGCTACCCTAGTTGACCAAGTCTGAAACATGACCTCTTATAAAAGTTGATTGTTGTTTAAAACCATATGAAAAATGGGCAAAGGCAAAGTGAGTAAAACATGTGGAAGACAATGGAACCAAGGGAAAAGTGCCAAATACCAGTGCAAATGTAGTGGTAAACCTTCACAAGggatacatgcacacacatgatctgtaattgtttttgtttgtaaatttaATTCATTCTATCTAATCCACATACTGTTGCACCAAACAACAAGTGCTTCATCCAAAAGCTGTTAACATATCTAGcaggaacattcaaaaacactcCCACAGCACTTCACTTGCTTCATAGAgaaataggttttgttttgttgtttttctttttgctgccCACAAATACATCTATACGTTAGATTTATTGGGAGAACAATTTAACATCTGGATTCCTGAGactaataatacacaatatttatttttcaagttttgtatatttaaatggatacaataaacattttgctTCATCTTTCTTATGTAACATCGTATCAGTTTCATAAATAGACGTTTTTTATAAGAATGCTTCAAAggctttttttccattaaaatttTAACTTGCACTTAGTAGGGAAGCATCAACCTTCTTGAAACCCACCTTTTCTGTGGATTTTAACTTGTAAAGTGTTTCTGCAACTAAAGGGATGATCTCACCAGTGTTTATTCAGACTAGAATATCAATACTAAAGGTTATTGCAGACCCTTCATAATGCCTCTACACCATATGTCACAGTGCAGCTATATGCAGTGGCTCTCAGAAGTATTCATcctccttggacttttccacatttcattgtgttacaacatgaaattagaatggatttaatcagtgtttgccactgatcaacacagccaatgtccataatgtcaaagtgaaa

Function

GO: NA

KEGG:

id description
K19728 UNC13D, MUNC13; protein unc-13 D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51644 lncRNA downstream 2779 15968106 ~ 15968353 (-) True G41449
TU51643 lncRNA downstream 4824 15965937 ~ 15966308 (-) True G41448
TU51640 lncRNA downstream 9291 15961357 ~ 15961841 (-) True G41445
TU51639 lncRNA downstream 10799 15959676 ~ 15960333 (-) True G41444
TU51638 lncRNA downstream 11588 15956099 ~ 15959544 (-) True G41443
TU51647 lncRNA upstream 7532 16007414 ~ 16007791 (-) True G41451
TU51648 lncRNA upstream 9060 16008942 ~ 16009394 (-) True G41452
TU51649 lncRNA upstream 9954 16009836 ~ 16010242 (-) True G41453
TU51650 lncRNA upstream 11130 16011012 ~ 16011364 (-) True G41454
TU51651 lncRNA upstream 14254 16014136 ~ 16016021 (-) True G41455
AMCG00012994 mRNA downstream 15893 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 46728 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00012989 mRNA downstream 162447 15803957 ~ 15808685 (-) True AMCG00012989
AMCG00012984 mRNA downstream 212462 15725994 ~ 15758670 (-) True AMCG00012984
AMCG00012985 mRNA downstream 248823 15719513 ~ 15722309 (-) False AMCG00012985
AMCG00012997 mRNA upstream 18848 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012998 mRNA upstream 38001 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013002 mRNA upstream 81379 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00013004 mRNA upstream 100434 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 108733 16108615 ~ 16128233 (-) True AMCG00013001
TU50830 other downstream 2855645 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3717689 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6858056 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9514954 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13786969 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1880343 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1954181 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2176179 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2242868 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2977178 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000055_00135666_00152563.mRNA True 3000 mRNA 0.45 29 CI01000055 135666 ~ 152716 (+)