RNA id: AMCG00013000


Basic Information

Item Value
RNA id AMCG00013000
length 1343
RNA type mRNA
GC content 0.53
exon number 9
gene id AMCG00013000
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16022722 ~ 16028826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTACGTAGTTGATGGGAAAAGTGAGGCTGAGTGTGTACTACGTCAGAGAGAAGATGGCGGCGCGCATGGTGTGGGGTGCTGTTGTAAGGACAGGTGTGGATTTGAGGCTCAGTCGGGCACTCGGAACCTCAGCTGCTGTGTGCCGACGGGCAGCCCCACTGGGACCGATGCCCAATGAGGATATTGATGTCACAGACCTGGACTCCTTGAAGAAGTACCGCAGCTGGACACGCTACATGAAGTTTGCAGAAGAGGCCAGCGGGAAGCCACAGTGGTGGAAAACGTACAGACAGCATGTCATCCAGGACGATGGTGCGGAGAAGATTGACATCGGCCTTCCTCAATTTCAACTTCCCCGAAGCCAGCAGCTGAGGAAGAGGAAGCGAGTGCTCAGAGAGAACCACAGGGACAGTGAACTGGAAAGAGAATCACGCCTGTACCGCTTGCGGATCCCGCTGGATGAGGTGaaggcagactgggagaggataAATGGGCCCTATCACTGTCAGAGGGTGGCCGAGCACTATGGCATCTACAGGGACCTCTTTCCAGGAGCCACCTTTGTGCCGAGGGTGGTGCTGCGTGTGTTGTACAGCCCAGATGGGAAGAGCAGTGCCCAGGTGCACTGTGGGAATGAGCTGACCCCCACTGAGGCCGGCAGCCCCCCGGAGGTGAAGTTCAGTGCAGAGGAGGGCTCTCTGTGGACCCTGCTGCTCACGAGTCCAGATGAACATCTCAGAGACAACGAGTCAGAATATGTTCATTGGCTAGTTGGAAACATTCCAGGTAATGCTGTGCAATCTGGCGAGGAGGTCTGCCACTATCTCCCCCCCTTCCCTGCCAAAGGCACAGGATTCCACAGGTTCATATTCGTTTTGTTCAAGCAGGACGGCCCAGTCAATTTCAAGGACGATTACAGGCCCTCTCCGTGTCACAGTCTCACAATGAGGACGTTCAGGACTGTGGATTTCTACAGGACACACCAGGATGCAATTACCCCTGCTGGACTCGCCTTCTTCCAGGCCCAGTGGGACATGTCTGTCACTCACACGTTCCACGAGCTACTGAatatGAAAGAGCCCATTTTTGAATTCGACAGACCGCCTGTTTACCACCCGCCCCAGAAGAAATACCCTCATGCTCAGCCTCTCAGATACCTGGAAAGATATAGAGAAAACCACAAGCCCACCTATGGCATCTACTGACAGTCCAGAGTGAATGGTTAGGACCTGCATTGCAGTTGTACAGTATTAAACTCCCCTAATTATCATTActtttcgttttttgttttttgtaataaaatcacaTCTGGAACAAACTTGGATTTCCATCCTATTCCA

Function

GO: NA

KEGG:

id description
K17419 MRPL38; large subunit ribosomal protein L38

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51508 lncRNA upstream 163352 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 231095 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 232578 15782426 ~ 15790144 (+) False AMCG00012987
TU51669 lncRNA downstream 44688 16073514 ~ 16074099 (+) True G41469
TU51686 lncRNA downstream 92617 16121443 ~ 16124871 (+) True G41484
TU51728 lncRNA downstream 304464 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 554576 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 594594 16623420 ~ 16623650 (+) True G41537
AMCG00012996 mRNA upstream 8412 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00012992 mRNA upstream 51484 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012993 mRNA upstream 65722 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012990 mRNA upstream 72590 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00012991 mRNA upstream 110013 15871092 ~ 15912709 (+) True AMCG00012991
AMCG00013005 mRNA downstream 109173 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013006 mRNA downstream 126853 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013009 mRNA downstream 407238 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013017 mRNA downstream 614090 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013010 mRNA downstream 679446 16708272 ~ 16710011 (+) True AMCG00013010
TU51470 other upstream 392095 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 543356 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 885993 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1389309 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1492916 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 2996735 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5240849 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5342017 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5397834 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5456081 21484907 ~ 21486808 (+) False G42344

Expression Profile