RNA id: AMCG00013002


Basic Information

Item Value
RNA id AMCG00013002
length 818
RNA type mRNA
GC content 0.36
exon number 2
gene id AMCG00013002
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16081261 ~ 16085241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCACATTCTCACAGACCCCGAAGTTCATCTCCCTTCAAAAGGAAAACTCATCGGCTGAAATCCACTGTGTTACTTCAGTAAAGGGCTTGGATGGGTTGTATTTGAAGCGTCGCTATGCCAAAAAAATTGACGTTCTTTACTTATCCTTTGATTTCCTTAAAGAAACAGTGGGGGATCTGTATAAAAATCGAATCACTATAAAAGGCCAATGCTGCGATTTTGTGATCATCCTCTCCCAGCTCACAGTCAGTGACAaaaaagaaaagctataAACCAGCTAAAATCaaccagaaaagaaaacacatttgtctcCAGCACCAAGGCCAAGAAAAGACCTATCCTTTAAAATGCTAAAGACTGGCTGAACATATTACAGGGtggttaaaatgtgttatttcaccATCTGAGTCAGTTTAAACAGcttgtcaaaatgtaattaattcccAAAGCACTGTGAGGGGCAACaactaaaataagtaaaaagacaaatgttttatattttcttggACTGATAATCATAATATCTATGTCATCGGTTGAGAGTTTTGATGACcaaaagacatttgttttactgaaagCTTCACTGCCTTTTGGAggctatatattaaatataatgccAAGTAGCTAAGAAGTTCATACTTATATAAAAACTGTACATGTCTGCCTGTAAATCAGGTTTCCCTAATCACTTGAACTGTTGTGTTGCTTAATAGGGTAATCCAGCAGTTTCTTTTGCATCTGCAATGTACATTTCTGCTTATTGCCATCTTTCAATATTAcctcattatattttaatacattttttgggggggttggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51660 lncRNA downstream 45325 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 65240 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 69897 16011012 ~ 16011364 (-) True G41454
TU51649 lncRNA downstream 71019 16009836 ~ 16010242 (-) True G41453
TU51648 lncRNA downstream 71867 16008942 ~ 16009394 (-) True G41452
TU51713 lncRNA upstream 84068 16169309 ~ 16208177 (-) True G41506
TU51721 lncRNA upstream 132140 16217381 ~ 16217595 (-) True G41510
TU51729 lncRNA upstream 247990 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 538178 16623419 ~ 16623773 (-) True G41538
TU51754 lncRNA upstream 549721 16634962 ~ 16636441 (-) False AMCG00013018
AMCG00012998 mRNA downstream 7233 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00012997 mRNA downstream 59514 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012999 mRNA downstream 81379 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 126022 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00012995 mRNA downstream 156857 15914228 ~ 15924404 (-) True AMCG00012995
AMCG00013004 mRNA upstream 15075 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013001 mRNA upstream 23374 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013003 mRNA upstream 61002 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013007 mRNA upstream 164896 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013008 mRNA upstream 447509 16532750 ~ 16533847 (-) True AMCG00013008
TU50830 other downstream 2965774 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3827818 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6968185 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9625083 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13897098 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1794984 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1868822 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2090820 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2157509 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2891819 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile