RNA id: AMCG00013004


Basic Information

Item Value
RNA id AMCG00013004
length 380
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00013004
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16100316 ~ 16104419 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AgctgtttaaaatgatctgtCACGACACAACAGGAAAGTACAATGAAGACACTGTTATTCATTGCACTCTGGGAAGTGTTCGCACTCCCTATAGTGTACCCATAATAACAAAGCACCAAGCTGATGGTGATAAGGTGATTCTGAGCTGTAGCTCTCATGGAGGGTACCCTAAGGGGGAGATCCAGTGGACTGATTGGGATGGCAATAATGTGAGTGGAGAAGACAGGTTCTCACTGGAATCAGATGACCGCTACACACTGAGCAGCAATCTGACCATCAACAAGTCCTTGCTGTTTTACAGCTGTTCTGTAATAAAAGAAGGAGTGACTGAACACACAACAGAATACCATGtCAAGCTTGAATCAAAAGAGGGCAGCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51660 lncRNA downstream 64380 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 84295 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 88952 16011012 ~ 16011364 (-) True G41454
TU51649 lncRNA downstream 90074 16009836 ~ 16010242 (-) True G41453
TU51648 lncRNA downstream 90922 16008942 ~ 16009394 (-) True G41452
TU51713 lncRNA upstream 64890 16169309 ~ 16208177 (-) True G41506
TU51721 lncRNA upstream 112962 16217381 ~ 16217595 (-) True G41510
TU51729 lncRNA upstream 228812 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 519000 16623419 ~ 16623773 (-) True G41538
TU51754 lncRNA upstream 530543 16634962 ~ 16636441 (-) False AMCG00013018
AMCG00013002 mRNA downstream 15075 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00012998 mRNA downstream 26288 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00012997 mRNA downstream 78569 16018730 ~ 16021747 (-) True AMCG00012997
AMCG00012999 mRNA downstream 100434 15971132 ~ 15999882 (-) True AMCG00012999
AMCG00012994 mRNA downstream 145077 15950836 ~ 15955239 (-) True AMCG00012994
AMCG00013001 mRNA upstream 4196 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013003 mRNA upstream 41824 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013007 mRNA upstream 145718 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013008 mRNA upstream 428331 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013018 mRNA upstream 525812 16630231 ~ 16639087 (-) True AMCG00013018
TU50830 other downstream 2984829 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3846873 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 6987240 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9644138 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 13916153 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1775806 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1849644 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 2071642 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 2138331 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2872641 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile