RNA id: AMCG00013005


Basic Information

Item Value
RNA id AMCG00013005
length 2288
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00013005
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16137999 ~ 16145425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGAAGCGGCCTCGTTTACACAGCTCCGTCTCCAACTTCCCCATTCATAAAAAAACTACTATCATTGGTATACAGGACGGCGTAATCTCTAACGTGTTGGTGCAAGTTACAATCCTCATCCCGCGAAAAGATGGGGTATATGACAGTGGAGCTGCACACACCGAGTCTTCTCCACCTGAAGAGGCTGCCTGGCATTCGCTCTTGGTCTTTACTTGTTGGAATAGCCTCAGTAGGGCTGGCAGCAGCTTACTACAGCTCGgATAGCTGGCTGTGGAAGCTGTTCTATGTGACTGGTTGCTGCTTCGTGGCTATACAGAACCTGGAGGATTGGGAGGAAGCCATTTTTGACAAGTCCAAGGGTCAGGTCTTGCTGAAGTCCTTTAACCTCTACACCAAGATCCTGACTCTGTGGAGGAAGGGCCACGAACAAGTGGTGGCCGAACTCAGACACATTCAAGATGTCAGTGTGGAAGAGGAGAAGGTGCGCTACCTGGGGAAGGGGTACCTGGTGGTATTGCGTTTTGCGACAGGCTTCTCCCACCCCCTGACCCAGAGTGCCACTTTAGGTGGGCGCAGCGATGCTGATGTTGTGGCCGGGCTCCTGAAGCGCTTCCTGGGTCTGGACAAGCAGCGGCCATGGGAGGAAGAGGTGGAAAGCAGTGACAGTGAGAGGGATGAAccagaagaagaggaggaggaggaacacTGATCGACAGGCGTCTGAGCCCTCCAGCTCAGCTCTGAACATGGTACCCTACCCTTGGCCCACACTACTAGTGGGCACCTGCTCAAGAAGCGCCACCATTTGGTACgtcaaactgaacaaaaactGACGCTGTGGCCTCTATTTTCTCAACACTGCCAGGGATCGATTCCTACAGAAGGCTGTAGTGTATGGGACTAAATGAAGTATACTGCcgatttgtatttttctccctattgtttttaattgcttatgCTCAAATCTAGGAAAATAagggattgttttgttttttatatttaaatgcttttaaaactcTACAAAatgatgttttgtaaatatctcTGAATGTGGAAGGAAGCTACACTATCCCTAAGGTTCAGTACAgtgtaaatctgttttatttttcagaacacCATTAATGTTGTTTATATGATTTCAGCTTGTGCAAGACCTCCCAAGTATGATCCTTCCCTGTAATTTTCCAAGTGAAGTGTACAGAATGCAGGGGGCTTAGGACTGCCGAGTCTTGTCTTCCACTTTAAGTGGGAGTGAATGAAGCACTGTCATTGTCAGGGAATGCGTCTCTGTTCTGTGTAACAGGCACACAGTgcgtttgtttgtgtttctggaCTTTAGTCTACCAAGTGTGAAAGCCACTACATTTTATACGCTTTAGTCAGAACTCTTTCAATTGAAACTGTAAGGTCAAGGAACATCTTAAAAATTGTACACAATCtatgaataaaaaaattgatgatttcagaaatgtttaacCTGCTTTGAAGAACAGGACCTAAATCTAAATGGCAGGAAGTCGTGCTAGATGATTTCTGTGCATTTGGTTTCAAACTGGCTCCAGCCCGAGACAGACCTAAGTGTTTGAAGACGCCACTAAATCGTTAACACTCTGACAGTAATAATATGCAAGCAATATCTACACCATTGCTCAACTGACACAATTTAGAGAAGTGCTGCTTTTTGTGGTTGCTTGTACCATAAGCAGTGGTTATTAAAGAATTAAAGTGATTGCTCTCCCTTACTATTATTATccttttgttattgatttagCAGCAGTTTCAAACACAAGGTCTGTTCCAGGGTGGAGCTGTGTTACAAACTACAGATTTCCAGCAGGAGTATAGGTTTGGTTTGATAATCCTTTTGGATGGCAGAGAGATGCAAATAACTGAAACTGTAGGAAAGATAATGCTTGATATTTGTGCTTAACATAGGAGAAATTATGAGATGGCAGGTCTTGTGTCCAAAGACTCAATTCTATATTCCATTGAATAATATAAAAGCATGATTCTGTTAAGAGTCAAGATTCACATTAAGAAACAATGTTTGGTTAGTAAATTCCTGAATGAAACTGAATGCTTTAAATTCTGATCAGTGTAATCATTTCATACATTCAGAACCAGTGTTatcaattttttaaatctttaaatgtgtatgtattccTTCATTCTCCCTTGAAactgttaatgaattaaagGAGTAAAGAGGTCTCATTTGAATTTTACTTTATTAGTGCAATTCCTAATAATACTGATATGACTGTATGCTTATAGTGTACAAATGGAT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51686 lncRNA upstream 13128 16121443 ~ 16124871 (+) True G41484
TU51669 lncRNA upstream 63900 16073514 ~ 16074099 (+) True G41469
TU51508 lncRNA upstream 278629 15859064 ~ 15859370 (+) True G41325
TU51493 lncRNA upstream 346372 15782426 ~ 15791627 (+) True AMCG00012987
TU51492 lncRNA upstream 347855 15782426 ~ 15790144 (+) False AMCG00012987
TU51728 lncRNA downstream 187865 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 437977 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 477995 16623420 ~ 16623650 (+) True G41537
TU51777 lncRNA downstream 573930 16719355 ~ 16723060 (+) True AMCG00013015
TU51778 lncRNA downstream 573930 16719355 ~ 16723060 (+) False AMCG00013015
AMCG00013000 mRNA upstream 109173 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00012996 mRNA upstream 123689 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00012992 mRNA upstream 166761 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012993 mRNA upstream 180999 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00012990 mRNA upstream 187867 15928314 ~ 15950132 (+) True AMCG00012990
AMCG00013006 mRNA downstream 10254 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013009 mRNA downstream 290639 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013017 mRNA downstream 497491 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013010 mRNA downstream 562847 16708272 ~ 16710011 (+) True AMCG00013010
AMCG00013015 mRNA downstream 574035 16719460 ~ 16729533 (+) False AMCG00013015
TU51470 other upstream 507372 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 658633 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 1001270 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1504586 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1608193 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 2880136 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5124250 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5225418 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5281235 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5339482 21484907 ~ 21486808 (+) False G42344

Expression Profile