RNA id: AMCG00013006



Basic Information


Item Value
RNA id AMCG00013006
length 819
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00013006
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16155679 ~ 16183420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCACCCAACGACGCAGCAATGTGAAATTCGTGGACAGCAACGGtattgagaaaaaaattaaaagGGGCACTGCTCAGAGGCAGGCTGTGTGGTGGTGGAGACCCCAGGCTGGCCTACTCCTCCTGTCTCTGTTGTCTTGTGTGGGGGGCTTGGCCTGGTTATACCTGACCCCAGATGATGGCATCACCGAGACCCTTGTTAGGCAGGGGGAGACGGTGCCGGAGCAGAGAGTGTACCAGGTGTCCTGCTCGGAAGATTACGACAACTACAAACGCTACCCTGGTTGTACCCCTCAGAAGTGTGGCAGGGCCGTCACAGACTCGGTGGTGAGCAGAGAGGAGGCAGCCATTTTGAGGAGGTATTTTGGAGAGCAGATCAAAGATGTCTTTTCTAAGGAGGATTTTGAGCTCTACCGGAGCAGGTGTTACTCCTGCACACTTAAAAAGTCTTTCTTGCCTCCTAGATCAGTAAGACAGAGGATACAAGAGACGATAGCCCAGACGTTCGGCCTAGATTCTTCCCGGCTCTACCTTACCAACCCCACGTTCTTCTCACGAATCAATAGCACCCTGGCTAAAACCACCCACGATGAGTACTGGCACCCCCACATCGACAAGGTGACCTACGGCTCCTTTGACTACACATCTCTGCTCTACCTCTCAGACTATGGGGTAGATTTCGGGGGCGGTCGCTTTATCTTCATGGACACGTCAGCCAATAGGACTGTGGAGCCCAGAGCAGGTGAGCGGTCAAATGTCACGCCTGTTGCGTTCCATGTGTCTGTTGTGGTTCACCAAGTTAGGGACTTTCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU51686 lncRNA upstream 30808 16121443 ~ 16124871 (+) True G41484
TU51669 lncRNA upstream 81580 16073514 ~ 16074099 (+) True G41469
TU51508 lncRNA upstream 296309 15859064 ~ 15859370 (+) True G41325
TU51494 lncRNA upstream 365535 15782426 ~ 15790144 (+) False AMCG00012987
TU51728 lncRNA downstream 149870 16333290 ~ 16333574 (+) True G41517
TU51750 lncRNA downstream 399982 16583402 ~ 16583699 (+) True G41536
TU51751 lncRNA downstream 440000 16623420 ~ 16623650 (+) True G41537
TU51777 lncRNA downstream 535935 16719355 ~ 16723060 (+) True AMCG00013015
TU51778 lncRNA downstream 535935 16719355 ~ 16723060 (+) False AMCG00013015
AMCG00013005 mRNA upstream 10254 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013000 mRNA upstream 126853 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00012996 mRNA upstream 141369 16008943 ~ 16014310 (+) True AMCG00012996
AMCG00012992 mRNA upstream 184441 15957831 ~ 15971238 (+) True AMCG00012992
AMCG00012993 mRNA upstream 198679 15956821 ~ 15957000 (+) True AMCG00012993
AMCG00013009 mRNA downstream 252644 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013017 mRNA downstream 459496 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013010 mRNA downstream 524852 16708272 ~ 16710011 (+) True AMCG00013010
AMCG00013015 mRNA downstream 536040 16719460 ~ 16729533 (+) False AMCG00013015
AMCG00013016 mRNA downstream 563750 16747170 ~ 16757092 (+) True AMCG00013016
TU51470 other upstream 525052 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 676313 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 1018950 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 1522266 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 1625873 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 2842141 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 5086255 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 5187423 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 5243240 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 5301487 21484907 ~ 21486808 (+) False G42344

Expression Profile