RNA id: AMCG00013007


Basic Information

Item Value
RNA id AMCG00013007
length 1074
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00013007
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16250137 ~ 16251210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCTGAGCGGCTCGGCGAACCTCAGCAGCCCTGACGCCGGGTCTGAGGACGAGCTGATCATCGCCTCCACGTTTGGGACCCTGCTGTCGCTGGTGTACGTGGTGGGGGTGTCGGGGAATGTCTACACGCTGGTGGTGATGTGCCACTCTATCCGTTTCGCCGCATCCATGTACATTTCCATCATCAACCTTGCCCTTGCCGACTTGCTCTACCTGTCCACCATCCCTTTCGTAGTGTGCACCTACTTGCTCAAGGACTGGTACTTCGGGGACGTCGGGTGCCGCATCATTTTAAGCCTCGACCTGCTCACCATGCACGCCAGCATCTTCACCCTGACGGTGATGTGCACCGAGCGCTACCTGGCCGTCACCAAGCCCCTAGACACGGTCAAGCGCTCCAAGGGTTACAGGAAAGGGATGGCCGGAGGAGTCTGGgtcctctccctcctgctcACCTTGCCCATGATGATTATGGTGAACCTAAAGACGACCAAGAAAGGCAACGGGGTGAAGAGGATGTGCGCTCCCACTTGGAGTCCAGAGGCTTACAAGATTTACGTTACGGTCCTTTTCTGCACCAGTATAATGGCCCCGGGGATCATCATAGGCTACTTGTACACGAAACTTGCCCGCACGTATCTGGAGTCCCAGAGAAACTCGGTCACCAACAAGGGGAATAACAAGCGCTCCCCCAAGCAGAAAGTATTGATCATGATCTTTACTATCGTCCTCGTCTTCTGGGCGTGTTTTCTCCCCTTTTGGATATGGCAGCTGTTGCCCCTCTATCTCAAGCCCCTGCGGCTGGCCTCTAACACCCAGACCTGTATCAACTACCTGGTGGCGTGTCTCACTTACAGCAACAGCTGCATCAACCCCTTCTTGTACACACTGCTCACAAAGAACTACCGGGAGTACCTGAAAAACAGGCACCGGAGTTTCTACCGGTACACGTCCTCGTTCAAGAAGCGGACCCCCAGTTTGCATTCATCCTGGGGGAAATCCATCTCGTCCAGTAACCAGTTCGATTTCCCCTCAGAGACTATGGTAATGGGACAGTTCAAGTTGCACTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001604 urotensin II receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51721 lncRNA downstream 32542 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 41960 16169309 ~ 16208177 (-) True G41506
TU51660 lncRNA downstream 214201 16035647 ~ 16035936 (-) True G41460
TU51651 lncRNA downstream 234116 16014136 ~ 16016021 (-) True G41455
TU51650 lncRNA downstream 238773 16011012 ~ 16011364 (-) True G41454
TU51729 lncRNA upstream 82021 16333231 ~ 16333595 (-) True G41518
TU51752 lncRNA upstream 372209 16623419 ~ 16623773 (-) True G41538
TU51754 lncRNA upstream 383752 16634962 ~ 16636441 (-) False AMCG00013018
TU51835 lncRNA upstream 895505 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 1050933 17302143 ~ 17302892 (-) True G41627
AMCG00013003 mRNA downstream 95282 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013001 mRNA downstream 121904 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013004 mRNA downstream 145718 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013002 mRNA downstream 164896 16081261 ~ 16085241 (-) True AMCG00013002
AMCG00012998 mRNA downstream 176109 16037883 ~ 16074028 (-) True AMCG00012998
AMCG00013008 mRNA upstream 281540 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013018 mRNA upstream 379021 16630231 ~ 16639087 (-) True AMCG00013018
AMCG00013012 mRNA upstream 426950 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013011 mRNA upstream 465306 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013014 mRNA upstream 481719 16732929 ~ 16735796 (-) True AMCG00013014
TU50830 other downstream 3134650 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 3996694 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7137061 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 9793959 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14065974 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1629015 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1702853 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1924851 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1991540 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2725850 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile