RNA id: AMCG00013010


Basic Information

Item Value
RNA id AMCG00013010
length 438
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00013010
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16708272 ~ 16710011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCATTGTAATTCACAGGCTAAAGTTGTGGACCCCCAGTCAGGAGATATATTGCCTCTACACACCTCAGGAGAGCTGCTGATCAGGGGATACTGTGTAATGCCAGAGTACTGGGATGATCCTGAGAAAACCAAGGACTGCATCAGTAACACTGGCTGGTATAAGACTGGTGACATAGCCAGCCTTGATGAGTATGGTTATTGCAAGATTGATGGCCGGATAAAGGACATGATCATCCGGGGAGGGGAGAACATCTACCCGGCGGAAATAGAGCAATTTCTGCACACACACCCAAAAATACATGAGGCCCAGGTGGTTGGCGTGAAGGATCAGAGAATGGTAGAGGAGGTGTGTGCCTGCATTAAGCTGAAAGAAGGAGAGCAGGCCTCTGCAGAGGAGATCAAAGCATTCTGCAAAGGCCAGGTGAGAGATGCGTAA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51751 lncRNA upstream 84622 16623420 ~ 16623650 (+) True G41537
TU51750 lncRNA upstream 124573 16583402 ~ 16583699 (+) True G41536
TU51728 lncRNA upstream 374698 16333290 ~ 16333574 (+) True G41517
TU51686 lncRNA upstream 583401 16121443 ~ 16124871 (+) True G41484
TU51669 lncRNA upstream 634173 16073514 ~ 16074099 (+) True G41469
TU51777 lncRNA downstream 9344 16719355 ~ 16723060 (+) True AMCG00013015
TU51778 lncRNA downstream 9344 16719355 ~ 16723060 (+) False AMCG00013015
TU51781 lncRNA downstream 20056 16730067 ~ 16731293 (+) True G41564
TU51782 lncRNA downstream 22893 16732904 ~ 16733177 (+) True G41565
TU51783 lncRNA downstream 25351 16735362 ~ 16735848 (+) True G41566
AMCG00013017 mRNA upstream 30941 16642916 ~ 16677331 (+) True AMCG00013017
AMCG00013009 mRNA upstream 270411 16436064 ~ 16437861 (+) True AMCG00013009
AMCG00013006 mRNA upstream 524852 16155679 ~ 16183420 (+) True AMCG00013006
AMCG00013005 mRNA upstream 562847 16137999 ~ 16145425 (+) True AMCG00013005
AMCG00013000 mRNA upstream 679446 16022722 ~ 16028826 (+) True AMCG00013000
AMCG00013015 mRNA downstream 9449 16719460 ~ 16729533 (+) False AMCG00013015
AMCG00013016 mRNA downstream 37159 16747170 ~ 16757092 (+) True AMCG00013016
AMCG00013023 mRNA downstream 759595 17469606 ~ 17476756 (+) True AMCG00013023
AMCG00013032 mRNA downstream 799276 17509287 ~ 17517737 (+) True AMCG00013032
AMCG00013029 mRNA downstream 823834 17533845 ~ 17557349 (+) True AMCG00013029
TU51470 other upstream 1077645 15620785 ~ 15630627 (+) False AMCG00012982
TU51437 other upstream 1228906 15477179 ~ 15479366 (+) True G41264
TU51320 other upstream 1571543 15130795 ~ 15136729 (+) False AMCG00012954
TU51166 other upstream 2074859 14632357 ~ 14633413 (+) True G41059
TU51114 other upstream 2178466 14528162 ~ 14529806 (+) False AMCG00012940
TU52302 other downstream 2315550 19025561 ~ 19029278 (+) True G41978
TU52747 other downstream 4559664 21269675 ~ 21278728 (+) True G42326
TU52756 other downstream 4660832 21370843 ~ 21418787 (+) True AMCG00013126
TU52772 other downstream 4716649 21426660 ~ 21486808 (+) True G42344
TU52771 other downstream 4774896 21484907 ~ 21486808 (+) False G42344

Expression Profile