RNA id: AMCG00013012


Basic Information

Item Value
RNA id AMCG00013012
length 4837
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00013012
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16678160 ~ 16687304 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCAGATGGGGCGTTTAATGGTGTGACAGCTCTGAAGTCTCTGcacattgaaaacaacaaactcAAGTTCCTGCCTCCCAGCCTAGAATTCACCACCATCCAGAACATGACACTGGCCAACAACTCTTGGATGTGCACTTGTCAGCTTGCCCCCCTGCGCAAGTGGATGGACTCCAGCAGGCTGCGTCCAGAAGCTACCTGTgaGACGCTGGGAAAGTCTGTCCAGGTGACTGGCTATTTGTGCAAAGAAAGGAGCAATGCCAACTGCTATTTCAACACTGTTCATCTCCTTTGCCCTGCTTCCCCCTCTTCTCTTCCCCACTGAAGAATTTCTCAAATAGTTACCAGTCTCCAAAAATTCCTTCTCCCCACATCAGCCTGCACTTGCCAGGTTGCCCTGTTTACTCTCTCTAGCATGTTATATAGCAATACATAAAAAGTCCCTTCTGAGGATGTAAAAGTTAGGTGCAAGGGGAATGACCTGTACCATCAAGTGAAGTGGGAATATGATATTTGATCTTTCTAGCGGTTTGTGTGTTAATTCCATGCAACAAGTTTTAACCATACTGCTAACACCCTAAAAGGGTGTAAAAAAACAAGCCTCAAAGTGGATCCAAACACCTTGTAATGTgatccttttgttttattttcatactaaATGTCAACAAAGCAGAGTCCCTCTTTGAGCCTTAgcatttacacatttcagtGTTTCCTAACCTCCTCCTCCTAACCTTTATTTAGGGTTGAAATTTTGGAATCTGAAACTTAGCACCAACCCCAATTTGGAAACATCTCGGCTCACCATAAGCTATCGTGGCACTAACATGGGACACATGTAGACAGACACGTGCTTATCTGCTTATCACTCTGCGAGTCCACAGCACAACCAGCAGAACTCAGTCACAGTTAGCCACAGGGGTTGCTATTGCACAAAAAGCCAAGGAAGCCCTTACTGACTGGAGCCCAACCAGCCTGGCAGCACTCAGTCAACTGTACGTCCCCACTTGGGAATCCTGTTCACAGATGGTTTAGACATCGCTAAGACTGAAACCAGCAATGTATGAGTGTAGGTTGAGCCCTATAGTCATCCCTTTTAGGGGTTAACTCATTGGAAGCCTGAATAGACCCTTTTAAATATGTTCTCAATTTAGAGGGGAGAGAGCAAGACAACCCACAAGGCACTTGTGAATAGGGATGTTTTAGAAAGTTTCAAGAATAacatattcaattaaatcaatatagaCATTCCCATTTCCAACAAATTTAGATTTCTCATGGCATGTAGAAATAGAGAAGTACTGACATATCTGATACGTGAATGTAAATTCAGCTGAAACATtcactttaaacaaataaacaaataaaagagaaagcagACAATGTgttcagaaatattaaaaaggaaagaaaaagctaAGTTACAGAAAGGGAATAGAAGTCCATTAAGAGGAATATAAGACACTAATTTGTGTTAATTGTACCAAAGAAGTTAAAGGAAGAATTGTGTGGAACACTGCAAGGGAACTTTAAGATAAGTGAGACTTGCAGGCGATTGTTGAGTttgtttgaacatttaaatagtaaGTCATGATTCAAGAGACAGCAGTCCTTGTTTATACGAAACAGAACATCTGTTAATTCATTTTCTGAGGAACACAATACtctgaaatgtttatatataatgctCAACCGCCTGTACAGGGCCACAGGCTTTGGATTCacgaattaaaaaaatagattagaTTAAGTTGGAAACTGCTTTAATGGAAAGCATTTATATTCCCATGGCAGAAGGTAGAATTTGGCAGTGGAAGAAGGCAGAGTAATCATGCCTAAAAATAACTGGCTATGGGTTTTAAAGACAGGATACATAATGTTTCAGAGAGAAGAGATACCAAAAAGGTAGTTTAAATTTCTAgaagttttaataaatatttgtccCCCACAATTAGGAGTAGGCAGTTATTCCAAGCCTGGCTTACAGCTAAAACATTCCCACACTGAAGAGAGGGCGACAGCACACAAACATCCTTTGAGGGACATCCAGCTTTAAGCCTCTCCTCCCACTCTGATCTCAGAACAAAATCATGGCAGAGCTTTGATGTCAGGAAGAGGACAGACACGCAGCCCTTATTGAAAGatcattttttcctttcacGAAAGAAGCCACTTTACCCTTTTTATTTGATGAAAATCTATCCTGGGAGACATTGGTGTAAATGAAAGGATTGGTTCACCAATAACTATGGCTGACTATTAGTATGAAATTTCTaggaaacaaattatatatatatatttttttttgttcaatggAAGACAGGTTCAAATATCTTTGATAATGTGGTCACCTGCTGTACATTAAAGATGCTATTAAGAGGCTTTGGATTTAGGAACATATTGTATGTTATGTAATGTGGTCCTTGGAATACACCAAGACttacaaaaatgcaatttccaaCAGTGGAAACTGCTCAACCCAGTacaccccacccccaaaacaaaacaaacttaacCATTTTGTATGTTTAGTATAAATATATGGAAGACAAGACTGTAGTTCTATTCTCTACAGTGCTATGAACTCTCTCCTCCAGCAGTGATTGGTTTCAATAGACACTGCTGTTTGTTGGGATTGATTAAGGGGCATCACCTGGCTTCATTccagatacatacataaatcaggGCAGGCGTTTCAAATCTCCTACTTTAAAAGCAGTCAGAATATGAATTGGTTGTGAATTTCTGCCTGTGTGTGGAATCTAACAAATTCTTTGACACTAACATTCAAAGAATTTTACCCAAATAGGTCTGATCCACATTCAATAAAAGGAGGAAGGTGTGCCCACCTGCCCAGACTGATATAAGGTAGCAGTTCTTTTAGCGagaagacatttgtttttgattttagttGTGGACTCGCTATAAGCAGGTTGGCTTATGCTAGAAGCACAGGGCCTTACAACCAATCACTTGAAAATACGGTTGACAGATATGACACCCCTATTAGCATTAGGCAGGAGGGAACGCTGCCAATGCAGAAATACTGTGGTGAATTGTATAGTATACGGTTATTCCTGGTTTTGGCAGCTCAATTTCTAACACCTTATTTATTACTATAGTAACAAGGGCTTTATTACTTCAAAAAGGAAGTGAAACTGGGAATCAGATTTTATCCAGCCGAGACTCATGCAATTCCTCAAATAaacaatgtactgtatatatacagtatattagcAAAATCATAGTAACATTCAGCAAATATGcagtttaaaattgtaatttcaaCTAATATTTTAACTGAATTGTGTAATAGTAATTTGTATTGCTATCATTTATACTCAAACTATATGAATGGACTGACTGTTGTGAACAGGTGAATATAACAGGGGAATCTATGCCACAGTATCTTTTCCTATTGTTTTTTGTGCCATTAGCTGCTTAACAGTTTTTCCTtcagtgtgaagaaaaaaaagattaaaatttaaatctattaaccaattaatttgaaagtgcCCTATGGTGCTACACACTGATTTACTGTTGTGGTATCAAGATATATTGACTGAGAATCTCGTCACTAGCTTGGTGATGTCGTCAGTAGAAAATATCTAACTGGTCATTCGTcagtttgtaaatatttgtgtttatttaaatattataagaTTAAATTATAAGACCTGAAAACcctgcagacacagacagtCAACATATTTTATTCCAAGCCCATGATGGCATTTATGCATTGAAGTCTTTATTTCATAGCTCACCAAAGATGAATTATAGGAAACTGTTGAACATTTGGCTTACTACATAGTAAGTTACCATAGaaattaacaattataatattgtgAATGCCAATATTTCACCTTGAACAGCATATAGGTCTGTACCCAAACAGGGTACGGGAGTTCTTGAATTACAGCCGGTTACAGAGTTTTGCAACAGCTGTGTGGGTCTTTCTTTGAGATGGTCACATTAGCGAAATGTGGTTGTATTAAACCACTGTTCCTACTGGGCCTGTCGCCATGCGTGTTCTGTCCAGATACTGAGGTACACCAGAAGACAGTGAATGCCTCTTTCAGACGCAAGGAGTTTGATGATCTTATGGTAACAAACTGCATGTGCTTCACACAGAGCAACATCATGTATCAAAAATGAGAATAAGAGACCTGGAACTGTCAAGgaggattttttaaattgttatagaCTTTGTAAATGACTACTGTGTGTTGGATAGTCTTTTGGGCCTTTTCATACAGTGGTTGATGGATTAAATTTACTATCAATGTTCTGGGCAATCAGTCCTACTTTAAACCTGAAAGTATAACTATACAGTTTGAAAATGTGCTATAATCCATCTGTGTTgtgcataatacaaattaagaaatgcCTCCTCTTATAAACTGACTGCATGCAATATTTGGCTATATTTAGGTTGTCACTGTTCAATTTATTGTGGGCATATGTCTACAGTCTCACTTAAATCCATCAGGAAGCTCCAGTAGCTTACACTCAGTTAGCAATTTGAACTGATAGCTTGGAAACTGGACTTTCCTTTGTGTTCTGGAGAATGCTGCAGTCACGTGTTACCCATGAGGAGAATGCTATAGACTGCGCAGGTCACTTTACTATACGCCTTGGGGAGGACTGCTGAAAACCAACCCACTTGAGTTCCCTGAAACTCAGGCATTTGTCAGTTCAGAAAATTCAGCAGTGTCTCTAAATAAATCTCTGCTGAGCACCTAATTATTCTAACAACctttacatttactttcaatAATATATGGTTTGTTGCAttctatttcaaataaaaatggtatGCTTTAATAAAG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 41719 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 54387 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 344565 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 460565 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 469983 16169309 ~ 16208177 (-) True G41506
TU51835 lncRNA upstream 459411 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 614839 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 789558 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 790511 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 823829 17511133 ~ 17511904 (-) True G41655
AMCG00013018 mRNA downstream 39073 16630231 ~ 16639087 (-) True AMCG00013018
AMCG00013008 mRNA downstream 144313 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013007 mRNA downstream 426950 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013003 mRNA downstream 523305 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013001 mRNA downstream 549927 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013011 mRNA upstream 29212 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013014 mRNA upstream 45625 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013013 mRNA upstream 69083 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013019 mRNA upstream 96349 16783653 ~ 16823491 (-) True AMCG00013019
AMCG00013021 mRNA upstream 156529 16843833 ~ 16889951 (-) True AMCG00013021
TU50830 other downstream 3562673 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4424717 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7565084 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10221982 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14493997 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1192921 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1266759 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1488757 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1555446 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2289756 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile