RNA id: AMCG00013018


Basic Information

Item Value
RNA id AMCG00013018
length 1884
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00013018
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16630231 ~ 16639087 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCATCACATCAGCACCAACACAACCAGCAACGAGCAGCACAAGTGTCCCTCAGTCCAAGTCCACAGTACACGATTCAAAGTACCGGCCGCTGACAAGCCGGGAGAGACGGTGCCTTTCCGCACTCTGCTTTTGAACCGCTGCCAGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGGCGAGGAGCAGCAGCGTCTATGTGACGAGCTGCAGGAGACCAAGCGCAAGGCCCAGCGGCGCTCACTAGGCAACATCAGGTTCATTGGGGAGCTGTTCAAGGTGAAGATGCTGGTGAAGAAAACCATGCACAATTGCATCGTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCAACTCCTCTCCACTATTGGCAAAGACCTGGACTTGGAGACCGCCAAGCCCCGCATGGATCAGTACTTCAGCCAGATGGAGCAGATCATCAGAGAGAGGAAGACCTCCACTCGAATCCGCTTCGTGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACATGGAAGCAGAGCTGGAGACGCACCATGAGCAGATCAAGGTGCAACAGCAGCTCATGAGCAAGAAGGACAACCGATGTGGGGGCCCTGGGGGGCCACGCCCTGCAGCTCCCGAGTCTGGGTGGCACAATACCGGCGCCCTGAAGCGCTGCTCCACCCTGCAGCAGTCGTCCTCCGCTGCTCCTTCCTCCATTTTTAGGAGTAGCTCTCGCCGGGATGGTGGTGAGTGTAGTAACCTCTTCAAGCGGCCGGAGCGTCATGAGCGCTGCCAGCGCGAACGCTGTGAGAGGAGAGGCGCCGGGGATAAGAGCGGCCTGGACAGGATTGACTTGAAGAAGCCAAAGTCCATCATTGGGGAGTGTCTCCACCTCAATCACATGAAGCCCTCAGCATTGGCTCCCCAGCGCTCCCAGCAGGGCGAGAGGAGGGACCAGCGCAAGGTCATCACCCTGTCATTCTCGTATGAGCGACTCCAGGGTGTCATGGAGCGCATCTTCGAGAAGGCCATCTCCGAACCCAACTTTTCCGCCACATATGCCAATATGTGCCAGTGCCTTCTGAGGTTCAAGGTCCCGACCACTGACAAGCCGGGAGAGAAGGTGACTTTCCGCACTCTGCTTTTGAACCGTTGCCTGAAGGAGTTTGAGATGGAGGAGGATGGAGACGAGGTCTtcaagaagaaacagaagatgCTGGATGCATCCTTGGGCGAGGAGCGGCAGCGTCTACGTGACGAGCTGCAGGAGGCCAAGCACAAAGCCCAGCGGCGCTCACTAGGCCACATAAAGTTCTTTGGGGAGCTGTTCAAGGTGAAGATGCTGACAGAGGCCATGATGCACGCCTGCATCTTCAAGCTGTTGAAGAACCACGAAGAGTCCCTGGAGTGCCTGTGCCAACTCCTCTCCACTATCGGCAAAGACCTGGACCTCGAGACAGCCAAGCCCCGCATGGACCAGTACTTCAGCCAGATGGAGCAGATGATCAGAGAGAGGAAGACCTCCACTCGAATCCGCTTCATGCTGCAGGACGTCTTGGACCTGAGAAGAGATAACTGGGTGCCCAGGAGGGGTGACCAGGGTCCTAAGACAATCGACCAGGTCCACAGGGAAGCAAAGCTGGAGGCGCACTGTGAGCAGATCAAGGTGCAGCAGCAGCTCATGAGCAAGAAGGACAACCGACGTGATGCAAACTTCAGTGAAAGTGTCCTGTCACGCGTCAGTCGggccagagcagagcaggcCAGGAAGAGAGTGACTTTTGTGAAAGCACTAGAAATAGAAGCACCAGTCCTTCTCTGGCGAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51752 lncRNA downstream 6458 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 296636 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 412636 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 422054 16169309 ~ 16208177 (-) True G41506
TU51660 lncRNA downstream 594295 16035647 ~ 16035936 (-) True G41460
TU51835 lncRNA upstream 507628 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 663056 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 837775 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 838728 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 872046 17511133 ~ 17511904 (-) True G41655
AMCG00013008 mRNA downstream 96384 16532750 ~ 16533847 (-) True AMCG00013008
AMCG00013007 mRNA downstream 379021 16250137 ~ 16251210 (-) True AMCG00013007
AMCG00013003 mRNA downstream 475376 16146243 ~ 16154855 (-) True AMCG00013003
AMCG00013001 mRNA downstream 501998 16108615 ~ 16128233 (-) True AMCG00013001
AMCG00013004 mRNA downstream 525812 16100316 ~ 16104419 (-) True AMCG00013004
AMCG00013012 mRNA upstream 39073 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013011 mRNA upstream 77429 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013014 mRNA upstream 93842 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013013 mRNA upstream 117300 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013019 mRNA upstream 144566 16783653 ~ 16823491 (-) True AMCG00013019
TU50830 other downstream 3514744 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4376788 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7517155 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10174053 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14446068 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1241138 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1314976 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1536974 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1603663 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2337973 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile