RNA id: AMCG00013019


Basic Information

Item Value
RNA id AMCG00013019
length 2550
RNA type mRNA
GC content 0.60
exon number 12
gene id AMCG00013019
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16783653 ~ 16823491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCGATAATGATGTTCTTACACTGATGTCCTGTCCTTACCTACCTATTCCTTCTGTAGAAGCGCAGTGTAAACCCTACTATTCTGATTACTCCCCAACCCGCCTTCTCATCCACAAGATGTGCACCAGCCACTACCTGGACCTCTTCATCACTGTGGTGATAGGCCTCAACGTTATTACCATGGCAATGGAACACTACCAACAACCCAAGGTTTTAGATGAAGCTCTGAAGATCTGTAACTACATCTTCACCATAGTCTTCGTTCTGGAGTCTGTCTTTAAACTGGTGGCTTTTGGGTTCCGGCGATTTTTTAAGGACAGGTGGAACCAACTCGATCTGGCCATTGTCCTTCTCTCCATCATGGGCATCACTCTGGAGGAGATTGAGGTCAATGCCTCCCTTCCCATCAACCCCACCATCATCCGCATCATGAGGGTCCTGCGCATCGCCAGGGTGCTGAAGCTGCTCAAGATGGCTGTCGGGATGAGAGCCCTGCTGGACACTGTGATACAAGCCCTGCCTCAGGTCGGGAACCTGGGACTTCTCTTCATGCTGCTCTTTTTTATCTTTGCCGCCCTGGGAGTGGAGCTGTTTGGGGACCTAGAGTGTGACGAAGATCACCCCTGCGAGGGCCTGGGCCGACACGCCACCTTCAGGAACTTTGGGATGGCGTTCCTCACCCTGTTCCGCGTGTCCACAGGAGACAACTGGAATGGCATAATGAAGGACACACTGCGGGACTGCGGCCAGGACACCAACCCCTGCTACAACACGGTGGTGTCGCCCATCTACTTCGTGTCATTCGTGCTGACGGCACAGTTTGTGCTGGTGAACGTGGTGATTGCCGTGCTGATGAAGCACCTGGAAGAGAGCAACAAGGAGGCCAAGGAGGAGGCAGAGATGGAGGCAGAGttggagctggagctgcagaGTTTCAACCACCCCGCCATCATGGGGGAGGGCCTTCCCTGTATCGCCGGGGAAATCAGAGACCGACCAGACAGCCCCGGGGGAGGGGCCTGTGATCCCACACATGTCAAAGTGgactctcctctctccctggaTCCCCCCATGCGGAGGCACTTGTTTGACACAGTCTCCCTGCTGATCCAGGGATCCCTGGAAGGAGAGCTCAGCCTCATGGACAATCTCTCAGGCTCCGTCTATCACCACTACGCCCTCCCACCACTGCCCAGCAAGTGCTCCACCGAGAAACAGATTCCTCTAGCGGAGATGGAGGCTCTGTCTCTGACATCTGAGAAATCCTGGTCCCTAGCTCTGACGGATGACTCTATGCCTGACGATATTAACACTCTCTTACTAACTACTCTGGAGTGCAATCCCGAGCTCTCAGAGGTGGATGGGGAGCCAGGCGAGCAGCTGACCGAGAACCTGCTGTGCGTGAGGAAGCCCTCGGTGGGCCGAACGCACTCCCTGCCCAATGACAGCTACATGTTCCTGCCACTCCACCCCACAGGCGCCCCCTCACCCCGCACTGCGTCACCTCAGAAGGGTCAGTCAGGTAAGCCTGCACTTTTTATCAGCTCCACCACCTCAGTGCAGTCCCAGCCAGCGGACAGCAGCACTCAGCACTTGGCGGTGCCCACTGACCTCTTCCGCCCCATCAGCCCTCACAGCTACTCTGACTCTGAGAGCATCCCCCGTATCCCACCCCCGCGCCGGGCACAGACCCTCAACCGCACCCTGCGCAGACAGGTGGCGGTGATCAATGACTCCCTGGACACTTTGTACACTGAAGCGGTAGAGGAGGGGGCAGCGGGGCAGAGCCGGAACAGCGAACTGTCTGCCTCGGGCTTCCCCTCCCAGCCGGCTGTGCTGCTGGTGCCCGCCACCCCCGGGGCATCCCCTAAACTGGCACGCTCCAGCGTTCGCACGCAGCACAATCAGAGCAACATGCCCAAGTGCCCCTCTCCCAGCCCATCCCCATCGccatccccccctcctcctccacctcccccgCTCCCCCCCACCAGGAGGAATCCCTTCGGGGAGCAGGAGGACACCGTGGACCAGGAGGTGTCGCGCATCATTACGGCCGGGCTGGGCCTGGGCGAGGGCTCGGACCGAGGGCCCTGTCTCCGCCAGCTGAAGAAGTACCACAGTGTGGATACTCAGGGCCGACGCCTCCTGCTGACCCGGCCCGCCTCCTGGCTGGACGACCCGCGCCGCCACTCCATCGAGATCTGCTCGTCCGTGGAGAGCAGCCCCCAGCGCAGCTCGGGCTCCTCGGGCTTCGTCTCGCGCGCCGAGAGTTTCCAGCAGCCCTCGCCGCGGCGTAAGAAGAAGATGAGTCCCCCCTGCATCTCTGTGGAGCCTCCAGAGAGCCAGGAGCTCCAGCCTGGCTTCCACACGGGGCTGCCCCCACCGCCAGGGAGGGACACTTGCCTGAGGAGGCGGGCACCGTCCTGCGACTCCAAGGACTCGATAGACCTGGCTGGGGAGGGTGTGCCCCCCGACGGCTCCCCCAACCCAAAGCTATTGACTCTTCCCAGTTTCTCCTTCGAGCAGACTGACGGCGAACATTAA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 147212 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 159880 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 450058 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 566058 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 575476 16169309 ~ 16208177 (-) True G41506
TU51835 lncRNA upstream 323224 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 478652 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 653371 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 654324 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 687642 17511133 ~ 17511904 (-) True G41655
AMCG00013013 mRNA downstream 15291 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013014 mRNA downstream 47857 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013011 mRNA downstream 64996 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013012 mRNA downstream 96349 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013018 mRNA downstream 144566 16630231 ~ 16639087 (-) True AMCG00013018
AMCG00013021 mRNA upstream 20342 16843833 ~ 16889951 (-) True AMCG00013021
AMCG00013020 mRNA upstream 98878 16922369 ~ 16979543 (-) True AMCG00013020
AMCG00013022 mRNA upstream 305916 17129407 ~ 17135059 (-) True AMCG00013022
AMCG00013026 mRNA upstream 579888 17403379 ~ 17412455 (-) True AMCG00013026
AMCG00013024 mRNA upstream 590573 17414064 ~ 17462961 (-) True AMCG00013024
TU50830 other downstream 3668166 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4530210 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7670577 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10327475 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14599490 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 1056734 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1130572 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1352570 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1419259 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2153569 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile