RNA id: AMCG00013020


Basic Information

Item Value
RNA id AMCG00013020
length 2247
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00013020
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16922369 ~ 16979543 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGTCATCCTGCTGAACTGTGTCACCCTGGGGATGTTCCACCCGTGTGAGGATATCCACTGCATCTCTGAACGCTGCAAAATCCTGAAGGACTTTGACGACTTCATCTTTGCTTTCTTTGCTGTGGAAATGGTGATCAAAATGGTGGCTCTGGGCATCTTTGGGAAGAAGTGTTACCTTGGTGACACATGGAACAGGCTGGATTTCTTCATCGTACTGGCAGGGATGCTGGAGTACTCCCTCAACCTGCAGAACGTCAGCTTCTCGGCCGTGCGCACCGTAAGAGTCCTCCGACCGCTGCGAGCCATCAACCGCGTCCCCAGTATGCGCATCCTGGTGACGCTGCTCCTGGACACCCTGCCCATGCTGGGGAATGTTCTGCTGCTCTGCTTCTTCGTCTTCTTTATCTTCGGCATCGTGGGTGTGCAGCTGTGGGCCGGCCTCCTCCGCAACCGCTGCTTCTGGCCCGAGAACTTCACTGTCCCCCAGTCCCTGGGCCTGCACAACTACTACCACACGGAGAACGACGACGAGAACCCCTTCATCTGCTCCCAGCCACGGGAGAACGGCATGCGCTACTGCCGCAGCATCCCCACACTGCGTGAGGAGGGCCAGACCTGCCTGCTGGACTCTAGCGCCTACAACAACACGGACAACACCACCTGCGTCAACTGGAACCAGTACTACACCAACTGCTCAGCCGGGGACGTCAACCCCTTCAAGGGAGCCATCAACTTCGACAACATCGGTTTCGCCTGGATTGCCATCTTCCAGGTGATCACGTTGGAGGGCTGGGTGGACATCATGTACTTCGTAATGGACGCACACTCTTTCtacaatttcatttatttcatccTGCTGATTATAGTGGGTTCCTTCTTCATGATCAACCTGTGCCTGGTGGTCATCGCCACGCAGTTTTCGGAGACCAAGCAGCGCGAGAGTCAGCTGATGAAGGAGCAGCGGGTGCGCTTCATGTCTAATGCCAGCACTCTAGCCAGCTTCTCTGAGCCGGGCAGCTGCTATGATGAGCTGCTCAAGTACCTGGTGCACGTGGTGCGCAAGGCCAGTCGGCAGGTGGGCCAGGTGTACCGGGTGGCCGCCACCAAGGCAGGGCTGCGCTTGGGCCCCAAACCAGGCACCGAGCAGCCTTCAAACAAGCGGCGGCGCAGGAAACAGCGGCGGGCATCTGTGCACCACCTGGTTCACCATcatcaccaccatcaccaccactaCCACGTGGGCAATGGCAGCCTGCGGGCCCGGCCCAATCCAGAGCTGGGAGACGTGGAGACGGGTTCCCTGCATCCTGGCCCGGCCTGCCTCATGCTGCCGCCTGCTTCCCCTGCCTCCCTTCATGAAGCTCCCATCCCACCACTGCCCGCCCCTGGCAACAGTGAGTCTGTGCACAGTGTCTACCACGCCGACTGCCACTTTGAGCCCGTCCACTGCAGCCCCAGCCCTGGGCTTCAGGGCCCCAAGAGGAACTCGGTGTCTTGTGCTTCCATCCCCAAAAACTACCCCACAGTGCACCCGTCCTCCCCACAGGAGCTCCACAAGGAGAAGGCCCTGGGGGAGTCTGCTAACAGCAGCTGTGGCGGAGGCACCCTGACCAACCTTAACATCCCCCCCCGGCCCTTTGGTACCATGAACCGAGTCCTGGAAACACAGAGTTCTGGTCCTTGTAAAGGCTCATGCAAACTGGCAAGCAACTGTAGCAACCTGGACAacctgacctttgaccctgaGAGCTGCCCGTACTGCGCCAAATCCGCCAACAATGACTCCGAGGGTACTGACAACGAGACAATGGATTCCGACAGCGAGGGCATCTACGAGTTCACGCAGGACGCCCACTACCGGGATCAGAGGGACACCAAGAAAGGGAGCTCCAAAGTGGGGGCGAAGGTGGGCCGCGTGTTACACTTCTGGAGGTTGGTGTGCGAGACCTTCCGCAAGATTGTGGACAGCAAGTACTTCGGGAGAGGGATCATGATTGCCATTCTCATCAACACACTCAGCATGGGCATCGAGTACCATGAGCAGAACCAAGCCACTTCTTCTGGAGAGCCAGTGTCCATGCTGGTGGAGCTGGGAACCTGGGTTACCTCCATCACCTCCCGCCTGTCCTCTGTAGGCCTCACAGCATGGAGTGGGAGACGTTTCATGGGCACTAATGACCCCAGGCAGACTTTGCAGCCTTCTGATAGTAGTGAAGTGTTGAAGCACAGTAGCTACTACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 285928 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 298596 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 588774 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 704774 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 714192 16169309 ~ 16208177 (-) True G41506
TU51835 lncRNA upstream 167172 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 322600 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 497319 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 498272 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 531590 17511133 ~ 17511904 (-) True G41655
AMCG00013021 mRNA downstream 32418 16843833 ~ 16889951 (-) True AMCG00013021
AMCG00013019 mRNA downstream 98878 16783653 ~ 16823491 (-) True AMCG00013019
AMCG00013013 mRNA downstream 154007 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013014 mRNA downstream 186573 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013011 mRNA downstream 203712 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013022 mRNA upstream 149864 17129407 ~ 17135059 (-) True AMCG00013022
AMCG00013026 mRNA upstream 423836 17403379 ~ 17412455 (-) True AMCG00013026
AMCG00013024 mRNA upstream 434521 17414064 ~ 17462961 (-) True AMCG00013024
AMCG00013025 mRNA upstream 484946 17464489 ~ 17468508 (-) True AMCG00013025
AMCG00013027 mRNA upstream 580218 17559761 ~ 17561006 (-) True AMCG00013027
TU50830 other downstream 3806882 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4668926 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7809293 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10466191 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14738206 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 900682 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 974520 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1196518 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1263207 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 1997517 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009442 True 6720 mRNA 0.51 36 NC_007123.7 27839277 ~ 28073562 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_06733190_06869248.mRNA True 2763 mRNA 0.52 11 CI01000063 6733190 ~ 6869248 (+)