RNA id: AMCG00013021


Basic Information

Item Value
RNA id AMCG00013021
length 2079
RNA type mRNA
GC content 0.58
exon number 14
gene id AMCG00013021
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16843833 ~ 16889951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAATCATGGCGTGTGTTTGCCTTACACTTACCTCAGCTCTCACTCTGTAGCAGCAACACCTGTGGGCGGCCAAGAAGTTTCCAAGAAGGACGATATTGGTGGACAGTTAAGCTGTATTCAGCTGCCTGTCGACTCCGGGAAAGGCAAACTGGGAGTAAGGACACAGGTAACCAAGCCCTGGCCTGACACTGGCAACCTTCTGCCTGCATCAGTGAAGCAGTTTGAACAGGGCCGATGGCAGAGTGCTGGGCATGCTAGCATGGAGGACATGTGCGGAAGCAAGAAGGATGTCAGTGCCTCAGCGGTGGTGCCCATCAATGGCCACGTGGACATGAAGACCAGCCTGACGCCTCCCCTCATCACCCACACCGCCGCCACCCCCATGCCCGTCCCCAAGAGCACGGGTATCAGCGACCTGCCGCCGGACTCTCGACGGGGCAGCAGCGTGTCTGTCGACCCCAACTGCTACGACATCAAGTCTCCGGTCAGTGACTCTGCTGCCCCACAGTCCAGCGCCCGCAGCTCCCCCTATGCCCCCtggagcacagccagcagctgGAACAGCCGACGCTCGAGCTGGAACAGCCTGGGCCGGGCCCCCAGCCTGAAGCGCCAGAAACGGCAGTCAGGGGAGCGGCGCTCGCTGCTGTCTGGTGACGGGCAGTCCAGCTCGGAGGAGGGCGAGGGCTGCTCGGAGGGCGAGGGTGGCTCCATCAGCGACTCCCTGCGCCGCCACCGCAATGAGTCCCTGGAAACCAAAAGCTCCTTTGACCTGCCGCCCGACACCCTGCAGGTGCCCACCTACCTGTACCGCTCAGCCAGCATGCACAGCGCCCGCCCCCCCTTGTCCGAGCACCACGACTGCAATGGCAAGACCTCCCCCACTGCTGCTACCGGCCCCGGGGCCCAGCTCTCCCTGGACGACCCCCACAGCGATGACGACAACGGAGATGACGAGGCCAACATGGTGAGAGGACTGGTTTATACTAGATGGTGTGACCGAGGGGACCGACACTTCAGGTCAAAGATCAGCTGCAGGGGCCGCAGAgccaggattcagaagtggtttgAGAAGCGTCAGCCAGAGTGGTGTCGCCGGAGGAGCTCCTGGGCGCTCTACATATTCCCCAGTGACTCCAAGTTTCGGATGACCTGCAATAAAATCATCACGCACAAGATGTTCGACCATATTGTCCTGGTGATTATCTTCCTGAACTGCATCACCATCGCCATGGAGAGGCCCAAGATCGAACCCCTCAGCCCGGAGCGCATATTCCTGACGTTGTCCAACTACATCTTCACAGTGATCTTCTTGGCCGAGATGACAGTAAAGGTGGTGGCGATGGGCTGGTGCTTTGGCAAGAAGGCCTACCTGAGGAGCACCTGGAACATCCTGGATGGGGTTCTGGTCATGATCTCGGTCATCGACATCCTGGTCTCCTTGATCTCCAACAGCGGCACCAAGATCCTCGGTATGCTGAGGGTCCTGCGCTTGCTCCGGACCCTGCGCCCCCTCAGAGTCATCAGCCGTGCACCAGGTCTGAAGCTGGTAGTGGAGACCCTGATGTCCTCTTTGAAGCCCATCGGCAACATCGTGGTCATCTGCTGTGCATTCTTCATTATTTTCGGCATCCTCGGGGTACAGCTCTTCAAAGGGAAGTTCTTTGTATGCCAAGGGGAGGACACCAGGAACATCACCAACAGATCTGATTGTCTGATAGCCAACTACAAGTGGGTCCGACACAAATACAACTTTGACAATCTGGGCCAGGCATTAATGTCCCTGTTTGTGCTGGCCTCCAAAGATGGATGGGTGGACATCATGTATGACGGACTGGACGCTGTGGGAGTTGACCAGCAGCCTGTCATGAACTACAACCCCTGGATGCTACTCTACTTCATCTCCTTCCTGCTCATCGTGGCCTTCTTCGTGCTCAACATGTTCGTGGGCGTGGTGGTGGAGAACTTCCACAAGTGCCGGCAGCACCAGGAGGCCGAGGAGGCCAAGCGTCGTGAGGAGAAAAGGCTCAAGAggatggagaaaaaaagacGCAGTAAGGAGAAACAGCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 207392 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 220060 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 510238 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 626238 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 635656 16169309 ~ 16208177 (-) True G41506
TU51835 lncRNA upstream 256764 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 412192 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 586911 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 587864 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 621182 17511133 ~ 17511904 (-) True G41655
AMCG00013019 mRNA downstream 20342 16783653 ~ 16823491 (-) True AMCG00013019
AMCG00013013 mRNA downstream 75471 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013014 mRNA downstream 108037 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013011 mRNA downstream 125176 16716516 ~ 16718657 (-) True AMCG00013011
AMCG00013012 mRNA downstream 156529 16678160 ~ 16687304 (-) True AMCG00013012
AMCG00013020 mRNA upstream 32418 16922369 ~ 16979543 (-) True AMCG00013020
AMCG00013022 mRNA upstream 239456 17129407 ~ 17135059 (-) True AMCG00013022
AMCG00013026 mRNA upstream 513428 17403379 ~ 17412455 (-) True AMCG00013026
AMCG00013024 mRNA upstream 524113 17414064 ~ 17462961 (-) True AMCG00013024
AMCG00013025 mRNA upstream 574538 17464489 ~ 17468508 (-) True AMCG00013025
TU50830 other downstream 3728346 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4590390 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 7730757 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10387655 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14659670 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 990274 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 1064112 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1286110 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1352799 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 2087109 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile