RNA id: AMCG00013022


Basic Information

Item Value
RNA id AMCG00013022
length 393
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00013022
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17129407 ~ 17135059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGCCGAGGATGGAGGAAATCAAGCTGAGGACCAAGGGGTTGGGGAGGTGGAAGGCAGGTCTTCCATCCCCAGAACTTTCATCCGACTCAACGACCTGTCCGGCGGCGGGGAGCGCAGCGAGGCTGAGCCCGGGGTGGGAGCTCAGGACACGGGCACAGCGGAGGATGCTTCGAGGAGCAGCGGGGAAGCGTTGCCCTACCCGTCCCTGGCCCCGGTGGTGTTTTTCTACCTAAAACAAACCACCCGGCCGCGGAATTGGTGTCTGAAAATGGTCTGCAACCCATATCCTTTTAATGTGTTAAAGCACAGAAGCACAAGTGTGTCCGTCAGCACGGGGAGGGTAAGCGCTGGGACGCGGGCGCCGGGAAGTATCTACAGATACCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51754 lncRNA downstream 492966 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 505634 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 795812 16333231 ~ 16333595 (-) True G41518
TU51721 lncRNA downstream 911812 16217381 ~ 16217595 (-) True G41510
TU51713 lncRNA downstream 921230 16169309 ~ 16208177 (-) True G41506
TU51835 lncRNA upstream 11656 17146715 ~ 17146981 (-) True G41612
TU51850 lncRNA upstream 167084 17302143 ~ 17302892 (-) True G41627
TU51871 lncRNA upstream 341803 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 342756 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 376074 17511133 ~ 17511904 (-) True G41655
AMCG00013020 mRNA downstream 149864 16922369 ~ 16979543 (-) True AMCG00013020
AMCG00013021 mRNA downstream 239456 16843833 ~ 16889951 (-) True AMCG00013021
AMCG00013019 mRNA downstream 305916 16783653 ~ 16823491 (-) True AMCG00013019
AMCG00013013 mRNA downstream 361045 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013014 mRNA downstream 393611 16732929 ~ 16735796 (-) True AMCG00013014
AMCG00013026 mRNA upstream 268320 17403379 ~ 17412455 (-) True AMCG00013026
AMCG00013024 mRNA upstream 279005 17414064 ~ 17462961 (-) True AMCG00013024
AMCG00013025 mRNA upstream 329430 17464489 ~ 17468508 (-) True AMCG00013025
AMCG00013027 mRNA upstream 424702 17559761 ~ 17561006 (-) True AMCG00013027
AMCG00013028 mRNA upstream 440748 17575807 ~ 17586606 (-) True AMCG00013028
TU50830 other downstream 4013920 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 4875964 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 8016331 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10673229 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 14945244 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 745166 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 819004 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 1041002 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 1107691 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 1842001 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile