RNA id: AMCG00013026


Basic Information

Item Value
RNA id AMCG00013026
length 934
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00013026
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17403379 ~ 17412455 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAAAACTGTCTGTAGAAGGTGGTTGACCATGGCGACGGGAGGAAAGGACCAAGGGACCCAGAAGCGCACAAACCGCCTGTGCAATGAAAAATCTCCTTATCTCCTACAGCACGCGCACAATCCTGTGGACTGGTTTCCATGGGGACAGGAAGCATTTGACAAAGCAAAATCAGAGGACAAGCCCATATTTCTGTCAGTGGGCTACTCTACCTGCCACTGGTGTCATGTGATGGAGCGCGAGTCTTTTGAGGATGCCGACATCGGTAAGCTCCTCGGTGAGAACTTTGTGTGCATCAAAGTGGACAGGGAGGAGCGCCCGGACGTGGATAAGGTCTACATGACCTTTGTGCAGGCAACAAGTGGAGGTGGCGGTTGGCCAATGAGTGTATGGCTAACCCCTGACCTTCGACCCTTCCTTGGCGGGACCTATTTCCCCCCAAAGGACAGCATGTACAGGCCAGGCTTCAAAACTGTCCTCCTGCGAATTACAGAGCAGTGGAAGAACAACAGGGAAGCCTTGGTGTCCAAAGGGGAACATATCCTGGAGGCACTGAGGAAAGGTACCGCCATTGCTGCCAGTGAGGGAGAGACACCCCCCCACTGCCCAGATGTGATGGAGAGGTGTTTCCAGCAGCTGGCCAGCACCTACGAGGAAGAGTACGGGGGATTCAGGGAATCGCCCAAATTCCCAACCCCAGTGAACCTGAGGTTCCTCTTCTCATACTGGGCTCAGCAGAAGACCTCCACTCAGGGGGCCCAGGCACTGCAAATGGCTCTGCACACCCTGAAGATGATGGCGCTGGGGGGCATCCATGACCACGTGGCTCAGGGTTTCCACCGCTACTCTACAGACTCCATATGGCATGTTCCACATTTTGAGAAGATGCTGTATGACCAGGGCCAGCTGGCAGTGGCCTACATTACTGCTTAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51850 lncRNA downstream 100487 17302143 ~ 17302892 (-) True G41627
TU51835 lncRNA downstream 256398 17146715 ~ 17146981 (-) True G41612
TU51754 lncRNA downstream 766938 16634962 ~ 16636441 (-) False AMCG00013018
TU51752 lncRNA downstream 779606 16623419 ~ 16623773 (-) True G41538
TU51729 lncRNA downstream 1069784 16333231 ~ 16333595 (-) True G41518
TU51871 lncRNA upstream 64407 17476862 ~ 17477270 (-) True G41647
TU51872 lncRNA upstream 65360 17477815 ~ 17479389 (-) True G41648
TU51885 lncRNA upstream 98678 17511133 ~ 17511904 (-) True G41655
TU51919 lncRNA upstream 164983 17577438 ~ 17577756 (-) True G41684
TU52046 lncRNA upstream 490993 17903448 ~ 17910017 (-) True AMCG00013038
AMCG00013022 mRNA downstream 268320 17129407 ~ 17135059 (-) True AMCG00013022
AMCG00013020 mRNA downstream 423836 16922369 ~ 16979543 (-) True AMCG00013020
AMCG00013021 mRNA downstream 513428 16843833 ~ 16889951 (-) True AMCG00013021
AMCG00013019 mRNA downstream 579888 16783653 ~ 16823491 (-) True AMCG00013019
AMCG00013013 mRNA downstream 635017 16756387 ~ 16768362 (-) True AMCG00013013
AMCG00013024 mRNA upstream 1609 17414064 ~ 17462961 (-) True AMCG00013024
AMCG00013025 mRNA upstream 52034 17464489 ~ 17468508 (-) True AMCG00013025
AMCG00013027 mRNA upstream 147306 17559761 ~ 17561006 (-) True AMCG00013027
AMCG00013028 mRNA upstream 163352 17575807 ~ 17586606 (-) True AMCG00013028
AMCG00013034 mRNA upstream 176412 17588867 ~ 17597730 (-) True AMCG00013034
TU50830 other downstream 4287892 13114893 ~ 13115487 (-) True G40778
TU50581 other downstream 5149936 12240396 ~ 12253443 (-) True AMCG00012888
TU49940 other downstream 8290303 9112441 ~ 9113076 (-) False AMCG00012829
TU49217 other downstream 10947201 6455721 ~ 6456178 (-) True G39487
TU47984 other downstream 15219216 2183885 ~ 2184163 (-) True G38490
TU52042 other upstream 467770 17880225 ~ 17899426 (-) False AMCG00013038
TU52041 other upstream 541608 17954063 ~ 18043587 (-) False AMCG00013042
TU52091 other upstream 763606 18176061 ~ 18191522 (-) True G41807
TU52133 other upstream 830295 18242750 ~ 18244093 (-) True G41836
TU52315 other upstream 1564605 18977060 ~ 18998766 (-) True AMCG00013071

Expression Profile